Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002399`

染色体: Chr05 坐标: 26483200-26489791 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002399`
名称	SmilChr05G002399
描述	DEAD-box ATP-dependent RNA helicase 46-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26483200 - 26489791 / `+`

ID 对照

NCBI Gene ID	`LOC131024289`
GeneID	`131024289`
locus_tag	`-`
NCBI Name	`LOC131024289`
原始查询	`SmilChr05G002399`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 46-like
产物	DEAD-box ATP-dependent RNA helicase 46-like
Arabidopsis	`AT3G06480` (AT3G06480) DEAD box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819825] identity=56.1; qcov=0.796; evalue=0; confidence=high
Rice	`Os01g0549400` - identity=69.8; qcov=0.392; evalue=0; confidence=low
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:1990904 (ribonucleoprotein complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF00397 (WW); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131024289

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809786.1`
2	Nucleoplasm	核质	0.60000	`XP_057809786.1`
3	Nuclear speckle	核斑点	0.20000	`XP_057809786.1`
4	Cytoplasm	细胞质	0.20000	`XP_057809786.1`
5	Chromosome	染色体	0.00000	`XP_057809786.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26484040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr5:26484131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr5:26484170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr5:26484404`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B52,B9,C29
`Chr5:26484533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr5:26484733`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B12
`Chr5:26484733`	`GC`	`G`	1bp_deletion	CDS_variant	1	B12
`Chr5:26484946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:26487507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,B77
`Chr5:26487594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B7,C60,C64,C66
`Chr5:26487735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr5:26488437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809786.1

1150 aa

575

1150

DEAD

ResIII

Helicase_C

PF00397 WW 22-52 aa PF00270 DEAD 524-693 aa PF04851 ResIII 533-687 aa PF00271 Helicase_C 731-839 aa

XP_057809787.1

1149 aa

574

1149

DEAD

ResIII

Helicase_C

PF00397 WW 22-52 aa PF00270 DEAD 523-692 aa PF04851 ResIII 532-686 aa PF00271 Helicase_C 730-838 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809786.1`	Pfam	`PF00397`	WW	Domain	22	52	4.5e-08	33.7	WW domain
`XP_057809786.1`	Pfam	`PF00270`	DEAD	Domain	524	693	1.4e-53	181.8	DEAD/DEAH box helicase
`XP_057809786.1`	Pfam	`PF04851`	ResIII	Family	533	687	2.9e-11	44.3	Type III restriction enzyme, res subunit
`XP_057809786.1`	Pfam	`PF00271`	Helicase_C	Domain	731	839	1.8e-36	125.4	Helicase conserved C-terminal domain
`XP_057809787.1`	Pfam	`PF00397`	WW	Domain	22	52	4.5e-08	33.7	WW domain
`XP_057809787.1`	Pfam	`PF00270`	DEAD	Domain	523	692	1.4e-53	181.8	DEAD/DEAH box helicase
`XP_057809787.1`	Pfam	`PF04851`	ResIII	Family	532	686	2.9e-11	44.3	Type III restriction enzyme, res subunit
`XP_057809787.1`	Pfam	`PF00271`	Helicase_C	Domain	730	838	1.8e-36	125.4	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953803.1
ATTAGGTTATCATTCAAGGGAGGGGGCAGTTTCACAAGTAGAGCGTGACAGGTGATTATTTCCCGCTTTGAACCCTAACCCAACCATTTGCAACAAAAATAAGCCTTGTTCTAGCTCCTCAATCCTCATACAACTCTAGCTTCCTCCCTCCGCAACAACGGGATTCAATAATTTTCCTATTTCAAGGGGCGGAATTGAACAGATTTGTTTCTGCAGCTCGGGCTCTCTCTATAGAGCTAGTTGAACTAGAATGGCCACTG...

XM_057953804.1
TTAGGTTATCATTCAAGGGAGGGGGCAGTTTCACAAGTAGAGCGTGACAGGTGATTATTTCCCGCTTTGAACCCTAACCCAACCATTTGCAACAAAAATAAGCCTTGTTCTAGCTCCTCAATCCTCATACAACTCTAGCTTCCTCCCTCCGCAACAACGGGATTCAATAATTTTCCTATTTCAAGGGGCGGAATTGAACAGATTTGTTTCTGCAGCTCGGGCTCTCTCTATAGAGCTAGTTGAACTAGAATGGCCACTGC...

CDS

2 records

下载 CDS FASTA

LOC131024289
ATGGCCACTGCCGAGGCATCGCCTAGCACACTTGGGCCCAGATATGCTCCAGATGATCCAACTCTACCTGAACCTTGGAAAGGATTAATTGATGGAAGTACGGGTCTTTTATATTACTGGAATCCTGAGACGAATGTTACGCAATATGAAAAACCCACATCTCTACCGCCTCCTTTGCCACCTGGGCCACCTCCTAAGATGAATCCTATCCCAGGTGCTAGAGCATCACAGTCAGAGAATGTTCAAACCCCTCAAAGTCA...

Protein

2 records

下载 Protein FASTA

XP_057809786.1
MATAEASPSTLGPRYAPDDPTLPEPWKGLIDGSTGLLYYWNPETNVTQYEKPTSLPPPLPPGPPPKMNPIPGARASQSENVQTPQSQQTIQAAHPSHGQMLSSGSHLGPTMQHGYLALEQVRPQMPQQPGQQVPSQLGQGQQGHPQSMQLMSMQPGHQAPYPFMQPMPHVQQGQMYPGAQMGPPHGFQFTHQHPQYTMHQQNMPSQGLQSSSEQSQHLIQGQQLPQKQEHKIEHGQRDDTDSHQGRQPGFSPAQQHLMQG...

XP_057809787.1
MATAEASPSTLGPRYAPDDPTLPEPWKGLIDGSTGLLYYWNPETNVTQYEKPTSLPPPLPPGPPPKMNPIPGARASQSENVQTPQSQQTIQAAHPSHGQMLSSGSHLGPTMQHGYLALEQVRPQMPQQPGQQVPSQLGQGQQGHPQSMQLMSMQPGHQAPYPFMQPMPHVQQGQMYPGAQMGPPHGFQFTHQHPQYTMHQQNMPSQGLQSSSEQSQHLIQGQQLPQKQEHKIEHGQRDDTDSHQGRQPGFSPAQQHLMQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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