Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002400`

染色体: Chr05 坐标: 26492103-26496935 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002400`
名称	SmilChr05G002400
描述	YTH domain-containing protein ECT4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26492103 - 26496935 / `+`

ID 对照

NCBI Gene ID	`LOC131024290`
GeneID	`131024290`
locus_tag	`-`
NCBI Name	`LOC131024290`
原始查询	`SmilChr05G002400`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	YTH domain-containing protein ECT4
产物	YTH domain-containing protein ECT4
Arabidopsis	`AT1G48110` (ECT7) evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229] identity=44.9; qcov=1.04; evalue=0; confidence=medium
Rice	`Os03g0317000` - identity=69.3; qcov=0.308; evalue=3.25e-97; confidence=low
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0061157 (mRNA destabilization)
KEGG	-
Pfam	PF04146 (YTH)
InterPro	-
eggNOG	-
NR	GeneID:131024290

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057809788.1`
2	Cytoplasmic granule	细胞质颗粒	0.80000	`XP_057809788.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.80000	`XP_057809788.1`
4	P-body	P-body	0.40000	`XP_057809788.1`
5	Nucleus	细胞核	0.00000	`XP_057809788.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26494057`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C77
`Chr5:26494057`	`TG`	`T`	1bp_deletion	CDS_variant	1	C77
`Chr5:26494277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr5:26494377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,B2,C35
`Chr5:26494568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3
`Chr5:26494576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3
`Chr5:26494592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3
`Chr5:26494639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3
`Chr5:26494704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3
`Chr5:26494722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3
`Chr5:26494736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3
`Chr5:26494739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,C26,C82,C85,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809788.1

700 aa

350

700

YTH

PF04146 YTH 366-508 aa

XP_057809789.1

665 aa

332

665

YTH

PF04146 YTH 331-473 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809788.1`	Pfam	`PF04146`	YTH	Domain	366	508	1.9e-49	167.6	YT521-B-like domain
`XP_057809789.1`	Pfam	`PF04146`	YTH	Domain	331	473	1.8e-49	167.7	YT521-B-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953805.1
TTTTTTTAGTAAAAGAAATAAAGGTTACTTGGAAATTAAGGTGGGAAAAGTTTGGTGTTGAGCAAAATTGAAACACATATTCTAGTAGTTTCTTTGCCCTAGAACTAGAACAGGATTCCTCTTTGTGCAGACGTAGTGCACCTTCTGCCACCCAATCTCTCTCTCTCTCTCTACATTTTTCAAGCTTTCATTCCTACGCACTCGACCGCCTTTTTTATTTTCTCTCTCTAGGGTTCTTTCTTAATCGCGTGGGCAAGGGG...

XM_057953806.1
ATTAAGGTGGGAAAAGTTTGGTGTTGAGCAAAATTGAAACACATATTCTAGTAGTTTCTTTGCCCTAGAACTAGAACAGGATTCCTCTTTGTGCAGACGTAGTGCACCTTCTGCCACCCAATCTCTCTCTCTCTCTCTACATTTTTCAAGCTTTCATTCCTACGCACTCGACCGCCTTTTTTATTTTCTCTCTCTAGGGTTCTTTCTTAATCGCGTGGGCAAGGGGAAAAATAGAGACTACTGCAATTAATTCTCACAGA...

CDS

2 records

下载 CDS FASTA

LOC131024290
ATGGAAGTGTACGATGTTCCTGATCAAGGACTTGTTGATACTTATCTGATTCAAGGTGCTGAGTCGAACCCACAGCCTACTGCTCAGTTTGAACTATACGGATCCATGTACAACGAGGGAGCACCTGACTATATTATTGACCAGGGCTTGTATTATCCTACTGGAAACAGCTATGGATACATCTGTACAGGATATGAACCAACAATGGAATGGGAAGACCAGCGTAGGTTTTTTGGTCTAGACAATCAAGATATTCATTA...

LOC131024290
ATGTACAACGAGGGAGCACCTGACTATATTATTGACCAGGGCTTGTATTATCCTACTGGAAACAGCTATGGATACATCTGTACAGGATATGAACCAACAATGGAATGGGAAGACCAGCGTAGGTTTTTTGGTCTAGACAATCAAGATATTCATTATACAGTCGCAACAAATGAGAACACACCATATGTATATTATTCTCCCAATTATGGATATGGGCAGTCTCCTTTCAACCCATACAATCCTTATATTCCTGGTGCTGT...

Protein

2 records

下载 Protein FASTA

XP_057809788.1
MEVYDVPDQGLVDTYLIQGAESNPQPTAQFELYGSMYNEGAPDYIIDQGLYYPTGNSYGYICTGYEPTMEWEDQRRFFGLDNQDIHYTVATNENTPYVYYSPNYGYGQSPFNPYNPYIPGAVIGADGSIISTQQYYALPSYENSVTSASYLPVVFQPRPDAVANGIVDSFIDTGGSYNKADGLGSKHNLALNTPNSSLTAMGDASGRRNSFAKMSEGRVTMGIGKQHPSSITSGSITSQAAPIHQIRGPQGMENGLRGKA...

XP_057809789.1
MYNEGAPDYIIDQGLYYPTGNSYGYICTGYEPTMEWEDQRRFFGLDNQDIHYTVATNENTPYVYYSPNYGYGQSPFNPYNPYIPGAVIGADGSIISTQQYYALPSYENSVTSASYLPVVFQPRPDAVANGIVDSFIDTGGSYNKADGLGSKHNLALNTPNSSLTAMGDASGRRNSFAKMSEGRVTMGIGKQHPSSITSGSITSQAAPIHQIRGPQGMENGLRGKASAVSSQLKTAFTSGNGSSNFESSNYSHAAVNKVKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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