Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002401`

染色体: Chr05 坐标: 26506676-26509653 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002401`
名称	SmilChr05G002401
描述	protein CHROMOSOME TRANSMISSION FIDELITY 7
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26506676 - 26509653 / `+`

ID 对照

NCBI Gene ID	`LOC131025446`
GeneID	`131025446`
locus_tag	`-`
NCBI Name	`LOC131025446`
原始查询	`SmilChr05G002401`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CHROMOSOME TRANSMISSION FIDELITY 7
产物	protein CHROMOSOME TRANSMISSION FIDELITY 7
Arabidopsis	`AT4G31400` (CTF7) protein CTF7 [Source:NCBI gene (formerly Entrezgene);Acc:829267] identity=47.4; qcov=1.03; evalue=1.59e-97; confidence=high
Rice	`Os04g0498900` - identity=48; qcov=1.02; evalue=3.72e-95; confidence=high
GO	GO:0000785 (chromatin); GO:0005634 (nucleus); GO:0007064 (mitotic sister chromatid cohesion); GO:0061733 (protein-lysine-acetyltransferase activity)
KEGG	-
Pfam	PF13878 (zf-C2H2_3); PF13880 (Acetyltransf_13)
InterPro	-
eggNOG	-
NR	GeneID:131025446

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811216.1`
2	Nucleoplasm	核质	0.40000	`XP_057811216.1`
3	Nuclear body	核内小体	0.20000	`XP_057811216.1`
4	Chromosome	染色体	0.00000	`XP_057811218.1`
5	Centromere	着丝粒	0.00000	`XP_057811218.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26507114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C40,C43
`Chr5:26507812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B64,B80,B84,C7,C79
`Chr5:26508536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr5:26508716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,C36
`Chr5:26508717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr5:26509174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,B29,B62,B85,C60
`Chr5:26509229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B62,B85,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811216.1

339 aa

170

339

zf-C2H2_3

Acetyltransf_13

PF13878 zf-C2H2_3 80-119 aa PF13880 Acetyltransf_13 265-333 aa

XP_057811217.1

339 aa

170

339

zf-C2H2_3

Acetyltransf_13

PF13878 zf-C2H2_3 80-119 aa PF13880 Acetyltransf_13 265-333 aa

XP_057811218.1

338 aa

169

338

zf-C2H2_3

Acetyltransf_13

PF13878 zf-C2H2_3 80-119 aa PF13880 Acetyltransf_13 264-332 aa

XP_057811219.1

338 aa

169

338

zf-C2H2_3

Acetyltransf_13

PF13878 zf-C2H2_3 80-119 aa PF13880 Acetyltransf_13 264-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811216.1`	Pfam	`PF13878`	zf-C2H2_3	Domain	80	119	4.8e-12	46.2	zinc-finger of acetyl-transferase ESCO
`XP_057811216.1`	Pfam	`PF13880`	Acetyltransf_13	Domain	265	333	2e-28	98.7	ESCO1/2 acetyl-transferase
`XP_057811217.1`	Pfam	`PF13878`	zf-C2H2_3	Domain	80	119	4.8e-12	46.2	zinc-finger of acetyl-transferase ESCO
`XP_057811217.1`	Pfam	`PF13880`	Acetyltransf_13	Domain	265	333	2e-28	98.7	ESCO1/2 acetyl-transferase
`XP_057811218.1`	Pfam	`PF13878`	zf-C2H2_3	Domain	80	119	4.9e-12	46.1	zinc-finger of acetyl-transferase ESCO
`XP_057811218.1`	Pfam	`PF13880`	Acetyltransf_13	Domain	264	332	1.9e-28	98.8	ESCO1/2 acetyl-transferase
`XP_057811219.1`	Pfam	`PF13878`	zf-C2H2_3	Domain	80	119	4.9e-12	46.1	zinc-finger of acetyl-transferase ESCO
`XP_057811219.1`	Pfam	`PF13880`	Acetyltransf_13	Domain	264	332	1.9e-28	98.8	ESCO1/2 acetyl-transferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057955234.1
ATAGATTAAGGTTTAATCTTTGAAGATTTTGTTATCTTGTTTTGTTAATTCACAGAATCAAAAAATCGTTCGTGAGCTCTCGTCAGAAATGAAATGTCAGAAATTGCCCTAACTTTCCCGCTCCACTCCCTCGCGACCGGCCGGTGAAGCTCACCGGTAGCAGACCATTGTCCGGCAACTGTTGCTAGAGAGCTTTGAGTCGCTGCCACCGTGCCCTGGACAAATCATAGTCATCCAAACGAATTCCGCAAATCGGCGGA...

XM_057955236.1
ATAGATTAAGGTTTAATCTTTGAAGATTTTGTTATCTTGTTTTGTTAATTCACAGAATCAAAAAATCGTTCGTGAGCTCTCGTCAGAAATGAAATGTCAGAAATTGCCCTAACTTTCCCGCTCCACTCCCTCGCGACCGGCCGGTGAAGCTCACCGGTAGCAGACCATTGTCCGGCAACTGTTGCTAGAGAGCTTTGAGTCGCTGCCACCGTGCCCTGGACAAATCATAGTCATCCAAACGAATTCCGCAAATCGGCGGA...

CDS

4 records

下载 CDS FASTA

LOC131025446
ATGCAGCCAAAGATTAACGCCTTCTTCAAGCCGTCGCCTTCTCACTTACTGGAATCGTCTCCATTTTCCGTTGTTGCAGGAGAATCAACCGCAGAACAGGAAACCGACGTCTCCTATAAACGCGCGCGTTCAGATCCAGAAGTAGAAACATCCAATGGACATGATCTTGAGGACAAGCTTCCCAAATTGGAGCAAGGCAAGAGTTGCAAAATTCTGAATAAGAAGAGAAAGTACGCACAGCTATTCTTGGAAGTTGGACA...

Protein

4 records

下载 Protein FASTA

XP_057811216.1
MQPKINAFFKPSPSHLLESSPFSVVAGESTAEQETDVSYKRARSDPEVETSNGHDLEDKLPKLEQGKSCKILNKKRKYAQLFLEVGQSDFLFHTCKVCSFKYAPGDEVDEKVHKTIHKNYTLGLPFKGWRNERVIDELDKGRIILVQDGDPPAQLKKVEDVVQMIETELGEGWILNKQCKQVYLFISSQRVSGCLVAEPIKKAYKLLSSSLVEKSNLPAKEKMRTSSTLQFGGVCLQREVIKREHVKHPEEGTHDGTILC...

XP_057811217.1
MQPKINAFFKPSPSHLLESSPFSVVAGESTAEQETDVSYKRARSDPEVETSNGHDLEDKLPKLEQGKSCKILNKKRKYAQLFLEVGQSDFLFHTCKVCSFKYAPGDEVDEKVHKTIHKNYTLGLPFKGWRNERVIDELDKGRIILVQDGDPPAQLKKVEDVVQMIETELGEGWILNKQCKQVYLFISSQRVSGCLVAEPIKKAYKLLSSSLVEKSNLPAKEKMRTSSTLQFGGVCLQREVIKREHVKHPEEGTHDGTILC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器