当前解析结果
SmilChr05G002406| 统一新 Gene ID | SmilChr05G002406 |
|---|---|
| 名称 | SmilChr05G002406 |
| 描述 | kinesin-like protein KIN-12E |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 26563827 - 26575030 / + |
| NCBI Gene ID | LOC131024702 |
|---|---|
| GeneID | 131024702 |
| locus_tag | - |
| NCBI Name | LOC131024702 |
| 原始查询 | SmilChr05G002406 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-12E |
| 产物 | kinesin-like protein KIN-12E |
| Arabidopsis | AT3G17360 (POK1)phragmoplast orienting kinesin 1 [Source:NCBI gene (formerly Entrezgene);Acc:820999] identity=53; qcov=0.54; evalue=0; confidence=medium |
| Rice | Os12g0590500- identity=45.1; qcov=0.511; evalue=0; confidence=medium |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024702 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057810222.1 |
| 2 | Spindle | Spindle | 0.80000 | XP_057810222.1 |
| 3 | Phragmoplast | Phragmoplast | 0.60000 | XP_057810222.1 |
| 4 | Spindle pole | Spindle pole | 0.60000 | XP_057810222.1 |
| 5 | Chromosome | 染色体 | 0.20000 | XP_057810222.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:26564036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,D10 |
Chr5:26564150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr5:26565200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,B77 |
Chr5:26565253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr5:26565833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B128,B46,C39 |
Chr5:26567419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr5:26567700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr5:26567957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C29 |
Chr5:26568163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B95,C10,C63,C73 |
Chr5:26568278 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,B139 |
Chr5:26568933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:26569371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C83,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810222.1PF00225
Kinesin 174-505 aa
PF16796
Microtub_bd 198-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810222.1 |
Pfam | PF00225 |
Kinesin | Domain | 174 | 505 | 8.8e-112 | 374.0 | Kinesin motor domain |
XP_057810222.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 198 | 320 | 5.8e-20 | 72.5 | Microtubule binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。