Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002407`

染色体: Chr05 坐标: 26575265-26578529 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002407`
名称	SmilChr05G002407
描述	uncharacterized SmilChr05G002407
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26575265 - 26578529 / `-`

ID 对照

NCBI Gene ID	`LOC131024706`
GeneID	`131024706`
locus_tag	`-`
NCBI Name	`LOC131024706`
原始查询	`SmilChr05G002407`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821000]; symbol=AT3G17365; hit=AT3G17365; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821000]; symbol=AT3G17365; hit=AT3G17365; species=arabidopsis; confidence=high
Arabidopsis	`AT3G17365` (AT3G17365) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821000] identity=61.3; qcov=0.916; evalue=2.96e-100; confidence=high
Rice	`Os08g0517600` (P0700D12.112-1) - identity=56.6; qcov=0.9; evalue=1.89e-94; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131024706

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810228.1`
2	Cytosol	细胞质基质	1.00000	`XP_057810228.1`
3	Cytoplasm	细胞质	1.00000	`XP_057810229.1`
4	Nucleoplasm	核质	0.20000	`XP_057810228.1`
5	Chromosome	染色体	0.00000	`XP_057810228.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26575705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:26577707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:26577945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810228.1

253 aa

126

253

Methyltransf_25

Methyltransf_31

Methyltransf_11

PF13649 Methyltransf_25 69-171 aa PF13847 Methyltransf_31 69-179 aa PF08241 Methyltransf_11 70-174 aa

XP_057810229.1

251 aa

126

251

Methyltransf_25

Methyltransf_31

Methyltransf_11

PF13649 Methyltransf_25 69-169 aa PF13847 Methyltransf_31 69-177 aa PF08241 Methyltransf_11 70-172 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810228.1`	Pfam	`PF13649`	Methyltransf_25	Domain	69	171	1.7e-11	45.4	Methyltransferase domain
`XP_057810228.1`	Pfam	`PF13847`	Methyltransf_31	Domain	69	179	2.6e-08	34.5	Methyltransferase domain
`XP_057810228.1`	Pfam	`PF08241`	Methyltransf_11	Domain	70	174	8.6e-12	46.3	Methyltransferase domain
`XP_057810229.1`	Pfam	`PF13649`	Methyltransf_25	Domain	69	169	9.5e-12	46.2	Methyltransferase domain
`XP_057810229.1`	Pfam	`PF13847`	Methyltransf_31	Domain	69	177	4.7e-09	36.9	Methyltransferase domain
`XP_057810229.1`	Pfam	`PF08241`	Methyltransf_11	Domain	70	172	4.9e-13	50.3	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954245.1
CTCTAGTCGCAAAATTAACAACAACAAACTTGCAAATCTAACCGATATTCTTGTTTGGGGGTTGATTTTCAAGAATAAGAGAAAAACTTGCGAATCTAACCAATAAGCTTAAGCTTGATCTATTTTTTCAAATCTCGTTGGGAAAAAACAATTTAGGAAAGTTATCCATCACACATATTTTTTGAGAACGAGTAATGAATGCGTGCAAGGGTGTTTTTGTAATTTGGAGCATAAGTAAGGGATGGAGGGGTATCTAACAG...

XM_057954246.1
ATTAACAACAACAAACTTGCAAATCTAACCGATATTCTTGTTTGGGGGTTGATTTTCAAGAATAAGAGAAAAACTTGCGAATCTAACCAATAAGCTTAAGCTTGATCTATTTTTTCAAATCTCGTTGGGAAAAAACAATTTAGGAAAGTTATCCATCACACATATTTTTTGAGAACGAGTAATGAATGCGTGCAAGGGTGTTTTTGTAATTTGGAGCATAAGTAAGGGATGGAGGGGTATCTAACAGAGACAACATTGAA...

CDS

2 records

下载 CDS FASTA

LOC131024706
ATGAAGGAAATGACGGCGGGTAAAACTCCGGAGGCCGCGGACGGCGACGGCGACGGCGACGACAGCACCACCAGCACGCAGGCGTACGGAGAAGCATGGTACTGGGACAACCGCTACGCGCAGGATCCATCCACCTTCGACTGGTACCAGAAATACCCCTCCCTCGCCCCTCTCATCCGCCTCTACATCCCCCGCCACCACCCCATTCTCGTCGTCGGCTGCGGCAATTCCGGTTTTAGTGAGGGACTGGCTGATGATGG...

Protein

2 records

下载 Protein FASTA

XP_057810228.1
MKEMTAGKTPEAADGDGDGDDSTTSTQAYGEAWYWDNRYAQDPSTFDWYQKYPSLAPLIRLYIPRHHPILVVGCGNSGFSEGLADDGYSEVINIDISTVVIEAMQRKYSNNPNLKYMVMDVQDMSAFDTRSFAAVIDKGKMFIFFVQCGLNSKQNAARMLVEVWRVLKDKGVYVLITYGSPVYRLPILKELSWTIKLHVIGKLQYGNTSNLARDLTTPIPLDANGGSTGTVGMNADVHYIYVCTKDKSQKNEA

XP_057810229.1
MKEMTAGKTPEAADGDGDGDDSTTSTQAYGEAWYWDNRYAQDPSTFDWYQKYPSLAPLIRLYIPRHHPILVVGCGNSGFSEGLADDGYSEVINIDISTVVIEAMQRKYSNNPNLKYMVMDVQDMSAFDTRSFAAVIDKGTLDSLLCGLNSKQNAARMLVEVWRVLKDKGVYVLITYGSPVYRLPILKELSWTIKLHVIGKLQYGNTSNLARDLTTPIPLDANGGSTGTVGMNADVHYIYVCTKDKSQKNEA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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