当前解析结果
SmilChr05G002413| 统一新 Gene ID | SmilChr05G002413 |
|---|---|
| 名称 | SmilChr05G002413 |
| 描述 | biotin synthase, mitochondrial-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 26648771 - 26653934 / - |
| NCBI Gene ID | LOC131024714 |
|---|---|
| GeneID | 131024714 |
| locus_tag | - |
| NCBI Name | LOC131024714 |
| 原始查询 | SmilChr05G002413 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | biotin synthase, mitochondrial-like |
| 产物 | biotin synthase%2C mitochondrial-like |
| Arabidopsis | AT2G43360 (BIO2)Radical SAM superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818937] identity=84.6; qcov=0.92; evalue=0; confidence=high |
| Rice | Os08g0540100 (P0666G10.131)- identity=86; qcov=0.901; evalue=0; confidence=high |
| GO | GO:0004076 (biotin synthase activity); GO:0005739 (mitochondrion); GO:0009102 (biotin biosynthetic process); GO:0051537 (2 iron, 2 sulfur cluster binding) |
| KEGG | smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04055 (Radical_SAM); PF06968 (BATS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024714 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057810236.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057810236.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810236.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810236.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810236.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:26649063 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr5:26649096 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | C69,C76 |
Chr5:26649096 |
T |
TA |
1bp_insertion | CDS_variant | 2 | C69,C76 |
Chr5:26649097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C69,C76 |
Chr5:26649857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:26649877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:26649943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,D1 |
Chr5:26650170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr5:26650177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B52 |
Chr5:26650298 |
TA |
T |
1bp_deletion | frameshift_variant | 117 | A1,A10,A11,A13,A15,A16,A2,A24,A25,A9,B101,B102,B104,B105,B109,B11,B112,B113,B114,B115,B117,B118,B119,B120,B123,B124,B125,B128,B129,B136,B137,B138,B140,B19,B2,B20,B22,B24,B29,B3,B31,B4,B41,B46,B48,B53,B54,B58,B61,B65,B68,B69,B71,B72,B74,B76,B77,B79,B82,B85,B87,B89,B9,B90,B91,B92,B94,B97,B99,C1,C10,C12,C13,C15,C16,C2,C23,C24,C25,C28,C29,C3,C30,C34,C36,C40,C41,C42,C43,C5,C55,C56,C6,C60,C62,C63,C66,C67,C69,C7,C71,C73,C74,C78,C79,C8,C80,C84,C85,C86,C9,D1,D2,D3,D4,D5,D8 |
Chr5:26650319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,C3 |
Chr5:26650324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B31,B48,B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810236.1PF04055
Radical_SAM 82-243 aa
PF06968
BATS 256-346 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810236.1 |
Pfam | PF04055 |
Radical_SAM | Domain | 82 | 243 | 4.2e-23 | 83.0 | Radical SAM superfamily |
XP_057810236.1 |
Pfam | PF06968 |
BATS | Domain | 256 | 346 | 1.6e-27 | 96.2 | Biotin and Thiamin Synthesis associated domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。