Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002418`

染色体: Chr05 坐标: 26697171-26697977 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002418`
名称	SmilChr05G002418
描述	uncharacterized SmilChr05G002418
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26697171 - 26697977 / `-`

ID 对照

NCBI Gene ID	`LOC131025725`
GeneID	`131025725`
locus_tag	`-`
NCBI Name	`LOC131025725`
原始查询	`SmilChr05G002418`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814982]; symbol=AT2G04420; hit=AT2G04420; species=arabidopsis; confidence=low
产物	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814982]; symbol=AT2G04420; hit=AT2G04420; species=arabidopsis; confidence=low
Arabidopsis	`AT2G04420` (AT2G04420) Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814982] identity=28.9; qcov=0.776; evalue=1.47e-16; confidence=low
Rice	`Os02g0630250` - identity=39.2; qcov=0.485; evalue=1.83e-16; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity)
KEGG	-
Pfam	PF13456 (RVT_3)
InterPro	-
eggNOG	-
NR	GeneID:131025725

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057811499.1`
2	Nucleus	细胞核	0.40000	`XP_057811499.1`
3	Cytosol	细胞质基质	0.40000	`XP_057811499.1`
4	Chromosome	染色体	0.00000	`XP_057811499.1`
5	Centromere	着丝粒	0.00000	`XP_057811499.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26697178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C29,C64,D1
`Chr5:26697179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr5:26697181`	`CGA`	`C`	2bp_deletion	frameshift_variant	32	A16,A22,A6,B105,B113,B126,B131,B133,B139,B30,B31,B33,B50,B60,B81,B90,B92,C20,C27,C28,C34,C35,C37,C40,C48,C54,C55,C63,C67,C74,D6,D8
`Chr5:26697207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr5:26697231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B103,C17,C19,C5
`Chr5:26697242`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C60
`Chr5:26697242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr5:26697247`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B43
`Chr5:26697247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B43
`Chr5:26697287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B112,B134,B14,B31
`Chr5:26697290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,D7
`Chr5:26697294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811499.1

268 aa

134

268

RVT_3

PF13456 RVT_3 117-236 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811499.1`	Pfam	`PF13456`	RVT_3	Domain	117	236	2e-20	73.7	Reverse transcriptase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955516.1
ATGAGCTGTCAGGACATTATCTCATTCTTGGTTATTGCTTGGAACTCCAATTTCAGCACCCTTTTGCAGAATCTTTGGAAGATTGGAATCATCACTTTGATTTGGATGATCTGGACAAGTAGGAATAATGCGGTTTTTGAGGACCAGGAGTTTTGTGCGGTTAAAGTAATGAAAGTTGTCAAGACGACATATAAGGAAACAGATAATTTTCGGAAACTTGGCTTCATGAGCAATGTTTGGAGCGATTATCTCACTCTTCG...

CDS

1 records

下载 CDS FASTA

LOC131025725
ATGAGCTGTCAGGACATTATCTCATTCTTGGTTATTGCTTGGAACTCCAATTTCAGCACCCTTTTGCAGAATCTTTGGAAGATTGGAATCATCACTTTGATTTGGATGATCTGGACAAGTAGGAATAATGCGGTTTTTGAGGACCAGGAGTTTTGTGCGGTTAAAGTAATGAAAGTTGTCAAGACGACATATAAGGAAACAGATAATTTTCGGAAACTTGGCTTCATGAGCAATGTTTGGAGCGATTATCTCACTCTTCG...

Protein

1 records

下载 Protein FASTA

XP_057811499.1
MSCQDIISFLVIAWNSNFSTLLQNLWKIGIITLIWMIWTSRNNAVFEDQEFCAVKVMKVVKTTYKETDNFRKLGFMSNVWSDYLTLRSLEVKSRPAPPPEFVSVFWWPPDIGWIKVNTDGSASAAPGLISAGGVFRDHRAFVCGCFHIKGGSGFAFEAELLAVITAIAIAHGRGWRRIWLEADSTYVVRLLQQRSMEVPWRFRAYWINTLSRLEDMVFKVSHIYREGNAAADIMAHPSRHEGWWTQEIAEIKDVVRVDMS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器