当前解析结果
SmilChr05G002428| 统一新 Gene ID | SmilChr05G002428 |
|---|---|
| 名称 | SmilChr05G002428 |
| 描述 | protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 26746963 - 26749954 / - |
| NCBI Gene ID | LOC131026201 |
|---|---|
| GeneID | 131026201 |
| locus_tag | - |
| NCBI Name | LOC131026201 |
| 原始查询 | SmilChr05G002428 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic |
| 产物 | protein TRIGALACTOSYLDIACYLGLYCEROL 4%2C chloroplastic |
| Arabidopsis | AT3G06960 (PDE320)pigment defective 320 [Source:NCBI gene (formerly Entrezgene);Acc:819881] identity=50; qcov=1.08; evalue=3.09e-156; confidence=high |
| Rice | Os01g0251000- identity=46.3; qcov=1.05; evalue=1.77e-127; confidence=high |
| GO | GO:0009941 (chloroplast envelope); GO:0034196 (acylglycerol transport); GO:0070300 (phosphatidic acid binding); GO:1990052 (ER to chloroplast lipid transport) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026201 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057811963.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057811963.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057811963.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811963.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811963.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:26749125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr5:26749162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:26749174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B32,B37,C11,C69,C76 |
Chr5:26749362 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B132 |
Chr5:26749362 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B132 |
Chr5:26749436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr5:26749517 |
GC |
G |
1bp_deletion | frameshift_variant | 8 | B103,B13,B28,B31,B53,C33,C42,C78 |
Chr5:26749523 |
TTC |
T |
2bp_deletion | frameshift_variant | 1 | C54 |
Chr5:26749523 |
TTC |
T |
2bp_deletion | CDS_variant | 1 | C54 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。