当前解析结果
SmilChr05G002441| 统一新 Gene ID | SmilChr05G002441 |
|---|---|
| 名称 | SmilChr05G002441 |
| 描述 | uncharacterized protein C594.04c-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 26905977 - 26907403 / + |
| NCBI Gene ID | LOC131026214 |
|---|---|
| GeneID | 131026214 |
| locus_tag | - |
| NCBI Name | LOC131026214 |
| 原始查询 | SmilChr05G002441 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:819302]; symbol=AT2G46890; hit=AT2G46890; species=arabidopsis; confidence=high |
| 产物 | 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:819302]; symbol=AT2G46890; hit=AT2G46890; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G46890 (AT2G46890)3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:819302] identity=66.9; qcov=0.97; evalue=1.36e-157; confidence=high |
| Rice | Os04g0105300- identity=65; qcov=0.648; evalue=1.83e-103; confidence=high |
| GO | GO:0006629 (lipid metabolic process); GO:0016020 (membrane); GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors) |
| KEGG | - |
| Pfam | PF02544 (Steroid_dh); PF04191 (PEMT); PF06966 (DUF1295) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026214 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057811977.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057811977.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811977.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811977.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811977.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:26906068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:26906111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr5:26906161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:26906182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B2 |
Chr5:26906223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:26906257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B128,B46,C39 |
Chr5:26906412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C28 |
Chr5:26906559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B37 |
Chr5:26906581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr5:26906829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C47,D11 |
Chr5:26906987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:26907068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811977.1PF06966
DUF1295 73-312 aa
PF02544
Steroid_dh 199-318 aa
PF04191
PEMT 239-302 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811977.1 |
Pfam | PF06966 |
DUF1295 | Family | 73 | 312 | 2.7e-65 | 220.9 | Protein of unknown function (DUF1295) |
XP_057811977.1 |
Pfam | PF02544 |
Steroid_dh | Family | 199 | 318 | 1.8e-05 | 25.5 | 3-oxo-5-alpha-steroid 4-dehydrogenase |
XP_057811977.1 |
Pfam | PF04191 |
PEMT | Family | 239 | 302 | 3.7e-06 | 28.0 | Phospholipid methyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。