Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002443`

染色体: Chr05 坐标: 26911650-26916092 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002443`
名称	SmilChr05G002443
描述	LRR receptor-like serine/threonine-protein kinase GSO1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26911650 - 26916092 / `-`

ID 对照

NCBI Gene ID	`LOC131026213`
GeneID	`131026213`
locus_tag	`-`
NCBI Name	`LOC131026213`
原始查询	`SmilChr05G002443`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase GSO1
产物	LRR receptor-like serine/threonine-protein kinase GSO1
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=61.9; qcov=0.985; evalue=0; confidence=high
Rice	`Os07g0498400` - identity=53.2; qcov=1.01; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131026213

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811976.1`
2	Nucleus	细胞核	0.00000	`XP_057811976.1`
3	Chromosome	染色体	0.00000	`XP_057811976.1`
4	Centromere	着丝粒	0.00000	`XP_057811976.1`
5	Chromatin	染色质	0.00000	`XP_057811976.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26912240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B38,B39,B79,D7
`Chr5:26912303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:26912570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:26912690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B38,B39,B79,D7
`Chr5:26912735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B38,B39,B79,D7
`Chr5:26912762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B140,B75,B91,C28
`Chr5:26912783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr5:26912804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B37,C8,C82
`Chr5:26912854`	`TG`	`T`	1bp_deletion	frameshift_variant	2	B53,D10
`Chr5:26912854`	`TG`	`T`	1bp_deletion	CDS_variant	2	B53,D10
`Chr5:26912909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:26913046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811976.1

1244 aa

622

1244

LRRNT_2

LRR_1

LRR_4

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 30-65 aa PF00560 LRR_1 92-114 aa PF00560 LRR_1 116-138 aa PF00560 LRR_1 140-162 aa PF00560 LRR_1 188-210 aa PF00560 LRR_1 236-258 aa PF12799 LRR_4 236-271 aa PF13855 LRR_8 257-295 aa PF00560 LRR_1 260-282 aa PF00560 LRR_1 284-306 aa PF00560 LRR_1 309-329 aa PF00560 LRR_1 357-378 aa PF00560 LRR_1 429-451 aa PF00560 LRR_1 453-475 aa PF00560 LRR_1 477-499 aa PF13855 LRR_8 500-560 aa PF00560 LRR_1 501-523 aa PF13855 LRR_8 595-655 aa PF00560 LRR_1 644-666 aa PF00560 LRR_1 717-738 aa PF13855 LRR_8 740-800 aa PF00560 LRR_1 741-762 aa PF00560 LRR_1 769-787 aa PF00560 LRR_1 789-810 aa PF00069 Pkinase 947-1220 aa PF07714 PK_Tyr_Ser-Thr 947-1220 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811976.1`	Pfam	`PF08263`	LRRNT_2	Family	30	65	4.6e-05	24.3	Leucine rich repeat N-terminal domain
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	92	114	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	116	138	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	140	162	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	188	210	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	236	258	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF12799`	LRR_4	Repeat	236	271	1.6e-61	203.6	Leucine Rich repeats (2 copies)
`XP_057811976.1`	Pfam	`PF13855`	LRR_8	Repeat	257	295	4.4e-59	196.8	Leucine rich repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	260	282	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	284	306	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	309	329	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	357	378	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	429	451	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	453	475	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	477	499	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF13855`	LRR_8	Repeat	500	560	4.4e-59	196.8	Leucine rich repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	501	523	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF13855`	LRR_8	Repeat	595	655	4.4e-59	196.8	Leucine rich repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	644	666	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	717	738	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF13855`	LRR_8	Repeat	740	800	4.4e-59	196.8	Leucine rich repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	741	762	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	769	787	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00560`	LRR_1	Repeat	789	810	2.2e-77	238.8	Leucine Rich Repeat
`XP_057811976.1`	Pfam	`PF00069`	Pkinase	Domain	947	1220	2.3e-44	152.5	Protein kinase domain
`XP_057811976.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	947	1220	1.1e-40	140.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955993.1
GAAGATGAATTTAACTTTAATTTTTCCCCCAAAAAATATGCCACTTTCCATTATTGTTCAAATAATAAATTATTCTTTAAATAAGAAAGTTCCAGCTCTCTCTACCCAAACCATCTGCAACTCTCCAAAAGTCCATTTTTAGTCTTGAGAGTTTCTGCAAATCACAATCTGTCAACCATCTTACAGCAAAATTTAATTCATTGAGTAGCGTAACTTCTGCAGATAGCCAATACCCTGATACTTAGTTGGCGGGGGCTGAG...

CDS

1 records

下载 CDS FASTA

LOC131026213
ATGTCTGCGACTACTACGATGGCAGCGCTGATGCTCGTTGTTGTGCTGCTGATTCTGCGTTTGGGGTCATGCCATTGCCACAACACCACCGACCTCCATATTCTCTTGGAGGCTCGAAAATCTTTCCTCCACGACCCACTAGACTGGTCCATCCACAACCCCGATTTCTGTGCATGGCGAGGCGTTTCCTGCTCCGGCGGCTCTGTGGTGGCTCTCGATCTCGCTGATTCTTCTCTGCGGGGGTCCATCCCACCGCCTCT...

Protein

1 records

下载 Protein FASTA

XP_057811976.1
MSATTTMAALMLVVVLLILRLGSCHCHNTTDLHILLEARKSFLHDPLDWSIHNPDFCAWRGVSCSGGSVVALDLADSSLRGSIPPPLALLPNLLHLNLSSNHLSGPIPPALSNLSSLESLLLFSNQLSGPIPPQLGSLLNLRLLRIGDNDLTGSIPPQLANLQNLVSLGLASCSLTGPIPPQLGLLPNLQTLVLQQNQLEGPIPPQLANCSSLVVFTAALNRLNGSIPEELASLANLQLLNLANNTLSGEIPAGLGSLPN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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