Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002451`

染色体: Chr05 坐标: 27062388-27069862 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002451`
名称	SmilChr05G002451
描述	multiple RNA-binding domain-containing protein 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27062388 - 27069862 / `-`

ID 对照

NCBI Gene ID	`LOC131026224`
GeneID	`131026224`
locus_tag	`-`
NCBI Name	`LOC131026224`
原始查询	`SmilChr05G002451`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	multiple RNA-binding domain-containing protein 1
产物	multiple RNA-binding domain-containing protein 1
Arabidopsis	`AT4G19610` (AT4G19610) nucleotide/nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827703] identity=51.2; qcov=0.942; evalue=0; confidence=high
Rice	`Os04g0611500` - identity=65.1; qcov=0.667; evalue=0; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF13893 (RRM_5)
InterPro	-
eggNOG	-
NR	GeneID:131026224

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811990.1`
2	Nucleolus	核仁	1.00000	`XP_057811990.1`
3	Nucleolus rim	Nucleolus rim	0.60000	`XP_057811990.1`
4	Nucleoplasm	核质	0.20000	`XP_057811990.1`
5	Chromosome	染色体	0.00000	`XP_057811993.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27063413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr5:27063456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:27063824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,C19,C34,C41
`Chr5:27065062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr5:27066465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr5:27067962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B37,C22
`Chr5:27068228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:27068270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:27068367`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811990.1

839 aa

420

839

RRM_1

RRM_5

RRM_1

RRM_5

PF00076 RRM_1 4-71 aa PF13893 RRM_5 301-400 aa PF00076 RRM_1 309-378 aa PF00076 RRM_1 505-564 aa PF00076 RRM_1 622-696 aa PF00076 RRM_1 722-789 aa PF13893 RRM_5 723-798 aa

XP_057811991.1

839 aa

420

839

RRM_1

RRM_5

RRM_1

RRM_5

PF00076 RRM_1 4-71 aa PF13893 RRM_5 301-400 aa PF00076 RRM_1 309-378 aa PF00076 RRM_1 505-564 aa PF00076 RRM_1 622-696 aa PF00076 RRM_1 722-789 aa PF13893 RRM_5 723-798 aa

XP_057811992.1

839 aa

420

839

RRM_1

RRM_5

RRM_1

RRM_5

PF00076 RRM_1 4-71 aa PF13893 RRM_5 301-400 aa PF00076 RRM_1 309-378 aa PF00076 RRM_1 505-564 aa PF00076 RRM_1 622-696 aa PF00076 RRM_1 722-789 aa PF13893 RRM_5 723-798 aa

XP_057811993.1

811 aa

406

811

RRM_5

RRM_1

RRM_5

PF13893 RRM_5 273-372 aa PF00076 RRM_1 281-350 aa PF00076 RRM_1 477-536 aa PF00076 RRM_1 594-668 aa PF00076 RRM_1 694-761 aa PF13893 RRM_5 696-770 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811990.1`	Pfam	`PF00076`	RRM_1	Domain	4	71	2.7e-82	271.4	RNA recognition motif
`XP_057811990.1`	Pfam	`PF13893`	RRM_5	Domain	301	400	1.9e-12	47.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057811990.1`	Pfam	`PF00076`	RRM_1	Domain	309	378	2.7e-82	271.4	RNA recognition motif
`XP_057811990.1`	Pfam	`PF00076`	RRM_1	Domain	505	564	2.7e-82	271.4	RNA recognition motif
`XP_057811990.1`	Pfam	`PF00076`	RRM_1	Domain	622	696	2.7e-82	271.4	RNA recognition motif
`XP_057811990.1`	Pfam	`PF00076`	RRM_1	Domain	722	789	2.7e-82	271.4	RNA recognition motif
`XP_057811990.1`	Pfam	`PF13893`	RRM_5	Domain	723	798	1.9e-12	47.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057811991.1`	Pfam	`PF00076`	RRM_1	Domain	4	71	2.7e-82	271.4	RNA recognition motif
`XP_057811991.1`	Pfam	`PF13893`	RRM_5	Domain	301	400	1.9e-12	47.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057811991.1`	Pfam	`PF00076`	RRM_1	Domain	309	378	2.7e-82	271.4	RNA recognition motif
`XP_057811991.1`	Pfam	`PF00076`	RRM_1	Domain	505	564	2.7e-82	271.4	RNA recognition motif
`XP_057811991.1`	Pfam	`PF00076`	RRM_1	Domain	622	696	2.7e-82	271.4	RNA recognition motif
`XP_057811991.1`	Pfam	`PF00076`	RRM_1	Domain	722	789	2.7e-82	271.4	RNA recognition motif
`XP_057811991.1`	Pfam	`PF13893`	RRM_5	Domain	723	798	1.9e-12	47.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057811992.1`	Pfam	`PF00076`	RRM_1	Domain	4	71	2.7e-82	271.4	RNA recognition motif
`XP_057811992.1`	Pfam	`PF13893`	RRM_5	Domain	301	400	1.9e-12	47.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057811992.1`	Pfam	`PF00076`	RRM_1	Domain	309	378	2.7e-82	271.4	RNA recognition motif
`XP_057811992.1`	Pfam	`PF00076`	RRM_1	Domain	505	564	2.7e-82	271.4	RNA recognition motif
`XP_057811992.1`	Pfam	`PF00076`	RRM_1	Domain	622	696	2.7e-82	271.4	RNA recognition motif
`XP_057811992.1`	Pfam	`PF00076`	RRM_1	Domain	722	789	2.7e-82	271.4	RNA recognition motif
`XP_057811992.1`	Pfam	`PF13893`	RRM_5	Domain	723	798	1.9e-12	47.7	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057811993.1`	Pfam	`PF13893`	RRM_5	Domain	273	372	5e-09	36.6	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057811993.1`	Pfam	`PF00076`	RRM_1	Domain	281	350	4.5e-66	219.4	RNA recognition motif
`XP_057811993.1`	Pfam	`PF00076`	RRM_1	Domain	477	536	4.5e-66	219.4	RNA recognition motif
`XP_057811993.1`	Pfam	`PF00076`	RRM_1	Domain	594	668	4.5e-66	219.4	RNA recognition motif
`XP_057811993.1`	Pfam	`PF00076`	RRM_1	Domain	694	761	4.5e-66	219.4	RNA recognition motif
`XP_057811993.1`	Pfam	`PF13893`	RRM_5	Domain	696	770	5e-09	36.6	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057956007.1
GCCGCACCAGCAGCTGCCGCACGACAAGCTCCCTCTCCCTCTCTGTCTCTCCGAGAAATCGCGACCTAATTCATAATCACAACAACCGCCTTCCGTCTCTTTCTGCGCTGCCCGCGGCTGTCTATCTCGTTGAAGCTATCTGTGCGGCGTGGAGTGTTGCAGTCTTACAGCCTTTTGCTTCTTATTTTGTATAAGAACAATATCCGCAAATCATGTCGCGAGTTTGTGTGAAAAACTTGCCCAAGTATGTAGTGGAGGAC...

XM_057956010.1
GCCGCACCAGCAGCTGCCGCACGACAAGCTCCCTCTCCCTCTCTGTCTCTCCGAGAAATCGCGACCTAATTCATAATCACAACAACCGCCTTCCGTCTCTTTCTGCGCTGCCCGCGGCTGTCTATCTCGTTGAAGCTATCTGTGCGGCGTGGAGTGTTGCAGTCTTACAGCCTTTTGCTTCTTATTTTGTATAAGAACAATATCCGCAAATCATGTCGCGAGTTTGTGTGAAAAACTTGCCCAAGTATGTAGTGGAGGAC...

CDS

4 records

下载 CDS FASTA

LOC131026224
ATGTCGCGAGTTTGTGTGAAAAACTTGCCCAAGTATGTAGTGGAGGACCATCTGAGAGAATTCTTCTCCCAGAAAGGGGAAGTGACAGATGCCAAGCTTATGCGCACCAAGGATGGGAAGAGTCGGCAATTTGGGTTTGTGGGTTATAGGACGGAGCATGAAGCTGAGGAAGCCATTAAGTATTTCAACAAATCTTTCATGCATACTTCCAGAATTACTTGTGAGATTGCTCGGAAGGTTGGAGATCCTGATATTCCTCG...

Protein

4 records

下载 Protein FASTA

XP_057811990.1
MSRVCVKNLPKYVVEDHLREFFSQKGEVTDAKLMRTKDGKSRQFGFVGYRTEHEAEEAIKYFNKSFMHTSRITCEIARKVGDPDIPRPWSRHSLKQKENLSAEEKNATVFKVSKALEQEGKTKKSVKDDDTDDPQFQEFLEVMQHRSKSKLWANDTVAAVSREQSNPVPDNNYKTEKGEENKLDGDLEGTEGELDAPSKKTDTPQILVHDEVVSDMDYFRSRIKKKWSDSESSDTEGSIDGTDHSDSDNDDSGAHKEKNN...

XP_057811991.1
MSRVCVKNLPKYVVEDHLREFFSQKGEVTDAKLMRTKDGKSRQFGFVGYRTEHEAEEAIKYFNKSFMHTSRITCEIARKVGDPDIPRPWSRHSLKQKENLSAEEKNATVFKVSKALEQEGKTKKSVKDDDTDDPQFQEFLEVMQHRSKSKLWANDTVAAVSREQSNPVPDNNYKTEKGEENKLDGDLEGTEGELDAPSKKTDTPQILVHDEVVSDMDYFRSRIKKKWSDSESSDTEGSIDGTDHSDSDNDDSGAHKEKNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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