Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002460`

染色体: Chr05 坐标: 27124866-27127639 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002460`
名称	SmilChr05G002460
描述	pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27124866 - 27127639 / `+`

ID 对照

NCBI Gene ID	`LOC131026234`
GeneID	`131026234`
locus_tag	`-`
NCBI Name	`LOC131026234`
原始查询	`SmilChr05G002460`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like
产物	pentatricopeptide repeat-containing protein At3g57430%2C chloroplastic-like
Arabidopsis	`AT3G57430` (OTP84) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824910] identity=63.2; qcov=0.97; evalue=0; confidence=high
Rice	`Os04g0118700` - identity=52; qcov=0.94; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131026234

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057812004.1`
2	Chloroplast	叶绿体	0.20000	`XP_057812004.1`
3	Nucleus	细胞核	0.00000	`XP_057812004.1`
4	Chromosome	染色体	0.00000	`XP_057812004.1`
5	Centromere	着丝粒	0.00000	`XP_057812004.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27124984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,B89
`Chr5:27125073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B122,B35,C71,D4
`Chr5:27125398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,C4,C9
`Chr5:27125416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr5:27125632`	`CA`	`C`	1bp_deletion	frameshift_variant	181	A10,A11,A13,A14,A15,A16,A18,A2,A22,A23,A25,A3,A4,A6,A7,A8,A9,B1,B10,B102,B104,B106,B108,B109,B11,B110,B111,B112,B115,B117,B118,B120,B121,B122,B123,B124,B125,B126,B128,B13,B130,B131,B132,B133,B134,B136,B137,B138,B139,B14,B15,B16,B17,B19,B22,B23,B25,B27,B28,B3,B30,B31,B32,B34,B35,B37,B38,B39,B41,B45,B46,B47,B48,B49,B5,B50,B54,B55,B57,B58,B6,B60,B62,B65,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B78,B82,B83,B85,B88,B89,B9,B91,B94,B95,B97,B98,C1,C10,C13,C14,C15,C16,C17,C18,C2,C20,C21,C22,C24,C25,C26,C27,C28,C29,C31,C32,C33,C34,C36,C39,C40,C42,C44,C45,C46,C47,C5,C50,C51,C52,C53,C56,C57,C58,C59,C6,C61,C62,C63,C64,C65,C66,C67,C68,C7,C70,C71,C72,C73,C75,C77,C78,C79,C80,C81,C82,C83,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7
`Chr5:27125715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,C75
`Chr5:27125956`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	B74
`Chr5:27125956`	`ATT`	`A`	2bp_deletion	CDS_variant	1	B74
`Chr5:27126419`	`CT`	`C`	1bp_deletion	frameshift_variant	162	A1,A11,A14,A19,A20,A21,A22,A23,A24,A3,A4,A5,A6,A7,A9,B1,B100,B101,B103,B104,B105,B106,B107,B108,B109,B11,B110,B113,B114,B115,B118,B119,B122,B126,B127,B128,B129,B131,B133,B134,B135,B136,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B31,B33,B36,B38,B39,B4,B42,B43,B44,B46,B47,B48,B49,B50,B51,B52,B53,B54,B56,B57,B58,B61,B63,B64,B65,B69,B7,B70,B73,B74,B77,B78,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B90,B91,B92,B93,B96,B97,B98,B99,C11,C12,C13,C15,C16,C17,C19,C23,C25,C26,C3,C30,C32,C33,C34,C35,C37,C38,C41,C42,C43,C44,C45,C46,C48,C49,C5,C54,C55,C60,C61,C67,C68,C69,C7,C74,C76,C77,C78,C8,C80,C82,C87,D1,D10,D11,D3,D5,D7,D8,D9
`Chr5:27126428`	`AG`	`A`	1bp_deletion	frameshift_variant	16	A10,B110,B112,B15,B17,B48,B58,B66,B98,C32,C61,C62,C68,C77,C82,D4
`Chr5:27126466`	`T`	`TA`	1bp_insertion	frameshift_variant	143	A10,A11,A13,A14,A15,A16,A18,A2,A25,A3,A4,A6,A7,A8,A9,B1,B10,B102,B106,B108,B109,B11,B111,B112,B115,B117,B118,B120,B121,B123,B124,B126,B128,B13,B130,B133,B136,B138,B139,B14,B17,B23,B25,B27,B28,B3,B30,B32,B34,B37,B38,B39,B41,B45,B46,B47,B5,B50,B54,B55,B57,B6,B60,B62,B65,B66,B67,B68,B69,B70,B71,B72,B73,B75,B76,B78,B81,B82,B85,B88,B89,B9,B91,B94,C1,C13,C14,C17,C18,C2,C20,C21,C22,C24,C25,C26,C27,C29,C33,C34,C36,C39,C4,C40,C45,C46,C47,C5,C50,C51,C52,C53,C56,C57,C59,C6,C61,C62,C63,C64,C65,C66,C7,C72,C73,C77,C78,C79,C80,C81,C83,C85,C86,C87,C9,D1,D10,D11,D2,D3,D5,D6,D7
`Chr5:27126837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B125,B35,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812004.1

866 aa

433

866

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

E_motif

PPR

Eplus_motif

DYW_deaminase

PF13041 PPR_2 132-171 aa PF01535 PPR 134-159 aa PF01535 PPR 209-229 aa PF13041 PPR_2 235-282 aa PF01535 PPR 237-267 aa PF01535 PPR 340-364 aa PF01535 PPR 413-440 aa PF01535 PPR 441-467 aa PF01535 PPR 530-557 aa PF13041 PPR_2 555-605 aa PF01535 PPR 558-587 aa PF01535 PPR 595-622 aa PF01535 PPR 633-656 aa PF20431 E_motif 676-738 aa PF01535 PPR 700-727 aa PF20430 Eplus_motif 743-770 aa PF14432 DYW_deaminase 774-866 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812004.1`	Pfam	`PF13041`	PPR_2	Repeat	132	171	3e-64	213.7	PPR repeat family
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	134	159	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	209	229	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF13041`	PPR_2	Repeat	235	282	3e-64	213.7	PPR repeat family
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	237	267	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	340	364	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	413	440	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	441	467	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	530	557	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF13041`	PPR_2	Repeat	555	605	3e-64	213.7	PPR repeat family
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	558	587	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	595	622	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	633	656	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF20431`	E_motif	Repeat	676	738	2.1e-21	76.6	E motif
`XP_057812004.1`	Pfam	`PF01535`	PPR	Repeat	700	727	1.3e-62	204.4	PPR repeat
`XP_057812004.1`	Pfam	`PF20430`	Eplus_motif	Motif	743	770	3.3e-07	30.6	E+ motif
`XP_057812004.1`	Pfam	`PF14432`	DYW_deaminase	Domain	774	866	8.4e-46	154.5	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057956021.1
TCCTCCTCATCCGCACGCGCTGATGTTTTAACCATGCACTGCTCCCTGCCTCTTCCTCCCTCTAATTCCATCCAAACCCAGAATTCGCCGGTCGTTACCACATCATCCCGACTCACCCGCTCCAACCACTCATGGGTCGAATCGCTTCGCTCCCACGCCCGTTCAAACTCCTTCCAGCAAGCCATTACCACTTTTGTTCAGATGCAGGCTGTCGGAATTCTACCCGATAATTACGCTTTCCCTGCTGTCTTAAAGGCCGC...

CDS

1 records

下载 CDS FASTA

LOC131026234
ATGCACTGCTCCCTGCCTCTTCCTCCCTCTAATTCCATCCAAACCCAGAATTCGCCGGTCGTTACCACATCATCCCGACTCACCCGCTCCAACCACTCATGGGTCGAATCGCTTCGCTCCCACGCCCGTTCAAACTCCTTCCAGCAAGCCATTACCACTTTTGTTCAGATGCAGGCTGTCGGAATTCTACCCGATAATTACGCTTTCCCTGCTGTCTTAAAGGCCGCCACCGCTCTTCAAGATTTGCGCCTCGGGAAGCA...

Protein

1 records

下载 Protein FASTA

XP_057812004.1
MHCSLPLPPSNSIQTQNSPVVTTSSRLTRSNHSWVESLRSHARSNSFQQAITTFVQMQAVGILPDNYAFPAVLKAATALQDLRLGKQIHGSLVKLGYDSHATVSNTVLHMYAKCGSDVDQVFKVFDRIPQRDQVSWNSLINALCKYQEWELALEAFRLMGLDKIEPSSFTLVSVALACSNLNRRDGLRLGKQLHGYSLRVDERKTFTDNSLMAMYAKLGRVDDAKIIFEWFAHHDMVSWNTIISAVSQNDRFYEGLEYFR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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