当前解析结果
SmilChr05G002480| 统一新 Gene ID | SmilChr05G002480 |
|---|---|
| 名称 | SmilChr05G002480 |
| 描述 | uncharacterized SmilChr05G002480 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 27339462 - 27345674 / + |
| NCBI Gene ID | LOC131025735 |
|---|---|
| GeneID | 131025735 |
| locus_tag | - |
| NCBI Name | LOC131025735 |
| 原始查询 | SmilChr05G002480 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=25.5; qcov=0.328; evalue=8.1e-38; confidence=low |
| Rice | Os06g0484800- identity=27.3; qcov=0.592; evalue=1.12e-81; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025735 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811506.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057811506.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057811506.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811506.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811506.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:27339512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr5:27339554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B58 |
Chr5:27339600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:27339605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B42,B43 |
Chr5:27339614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr5:27339666 |
GT |
G |
1bp_deletion | frameshift_variant | 5 | B39,B59,C19,C78,D6 |
Chr5:27339666 |
GT |
G |
1bp_deletion | CDS_variant | 5 | B39,B59,C19,C78,D6 |
Chr5:27339694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C25,C31 |
Chr5:27339704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B33,C52,C75,C84 |
Chr5:27339881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,C8 |
Chr5:27339903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr5:27339909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C8,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811506.1PF00078
RVT_1 556-701 aa
PF13966
zf-RVT 956-1037 aa
PF13456
RVT_3 1167-1288 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811506.1 |
Pfam | PF00078 |
RVT_1 | Domain | 556 | 701 | 3.4e-14 | 53.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811506.1 |
Pfam | PF13966 |
zf-RVT | Domain | 956 | 1037 | 1e-17 | 65.3 | zinc-binding in reverse transcriptase |
XP_057811506.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1167 | 1288 | 1e-17 | 64.9 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。