Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002491`

染色体: Chr05 坐标: 27590397-27597253 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002491`
名称	SmilChr05G002491
描述	uncharacterized SmilChr05G002491
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27590397 - 27597253 / `+`

ID 对照

NCBI Gene ID	`LOC131026262`
GeneID	`131026262`
locus_tag	`-`
NCBI Name	`LOC131026262`
原始查询	`SmilChr05G002491`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844295]; symbol=AT1G79570; hit=AT1G79570; species=arabidopsis; confidence=medium
产物	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844295]; symbol=AT1G79570; hit=AT1G79570; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G79570` (AT1G79570) kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844295] identity=40.4; qcov=1.04; evalue=0; confidence=medium
Rice	`Os12g0594300` - identity=79.2; qcov=0.226; evalue=8.25e-159; confidence=weak
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF00564 (PB1); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131026262

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057812045.1`
2	Cytoplasm	细胞质	0.40000	`XP_057812045.1`
3	Cytosol	细胞质基质	0.20000	`XP_057812045.1`
4	Nucleus	细胞核	0.00000	`XP_057812045.1`
5	Chromosome	染色体	0.00000	`XP_057812045.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27592692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C52,C84
`Chr5:27592850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B55,B80,D10
`Chr5:27593327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr5:27593501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:27593713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr5:27594205`	`AG`	`A`	1bp_deletion	frameshift_variant	3	A1,B122,D8
`Chr5:27594205`	`AG`	`A`	1bp_deletion	CDS_variant	3	A1,B122,D8
`Chr5:27594566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:27594771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:27595082`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C35
`Chr5:27595082`	`AC`	`A`	1bp_deletion	CDS_variant	1	C35
`Chr5:27595312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812045.1

1297 aa

648

1297

PB1

Pkinase

PK_Tyr_Ser-Thr

PF00564 PB1 204-284 aa PF00069 Pkinase 1015-1274 aa PF07714 PK_Tyr_Ser-Thr 1016-1277 aa

XP_057812046.1

1297 aa

648

1297

PB1

Pkinase

PK_Tyr_Ser-Thr

PF00564 PB1 204-284 aa PF00069 Pkinase 1015-1274 aa PF07714 PK_Tyr_Ser-Thr 1016-1277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812045.1`	Pfam	`PF00564`	PB1	Domain	204	284	3.2e-20	72.6	PB1 domain
`XP_057812045.1`	Pfam	`PF00069`	Pkinase	Domain	1015	1274	2.9e-48	165.3	Protein kinase domain
`XP_057812045.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	1016	1277	5e-62	210.3	Protein tyrosine and serine/threonine kinase
`XP_057812046.1`	Pfam	`PF00564`	PB1	Domain	204	284	3.2e-20	72.6	PB1 domain
`XP_057812046.1`	Pfam	`PF00069`	Pkinase	Domain	1015	1274	2.9e-48	165.3	Protein kinase domain
`XP_057812046.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	1016	1277	5e-62	210.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956062.1
GACTTTGATAGGATGCGAGTTTAGTAGTCACTGGACGTTAATGTAGAGAAGCGCCAAGCAGGAAACTTTCGCGCATTGGTGTTGGCTATTTATATAGTTGTAGAGAGAGAAGACTAGAGTGAGAAAGAAAGAGACTTTTCTGGTGACGATCCACGACTTTATAGCTTTTAACACAGTTGAGGGAAAATCATCACTTTACTCTGCCGCAGGGTTGCATCTCTACGCTATTTTTCTGTTTCAGTTAGAAAACTGAATTCAGA...

XM_057956063.1
GCCGCAGGTATATATTTCTTAATCAGCAACCTTTTGCCAAGTTGTGGAATTTCAGTTGATCTATCTCGATTCTTTGCTCACAAAGATTAATGAATCATGATTTTGTTTTTGTGAACTGTGGTTGCATCTCTACGCTATTTTTCTGTTTCAGTTAGAAAACTGAATTCAGAAATGAATAATAGCGTAGTTCTTATTTTAGAGCCTGATTGAGAACTAAAAGTTCATCGATTGGGGAAGTTGCCTGCCCCATTAAGTGGAAT...

CDS

2 records

下载 CDS FASTA

LOC131026262
ATGGAACAGGTAAAAGGAAATTTCCTCAAGGACCAGCAGAAAAATCCTGAACATATTAGTTATAATTCTGTGGAGAAAAGGAATGAGGGTGTGGGAAATCTAAACCAGAGATTTAATCAGGATCCTTCCAACTATATGAATATGAATATAAGACCGGCTGATCTTAATGCAAGTGCTGGTGCAAGACCTGTTCTGAACTACTCAATTCAGACTGGTGAGGAGTTTGCTCTTGAATTTATGTGGGAAAGGGTGAATCCCAG...

Protein

2 records

下载 Protein FASTA

XP_057812045.1
MEQVKGNFLKDQQKNPEHISYNSVEKRNEGVGNLNQRFNQDPSNYMNMNIRPADLNASAGARPVLNYSIQTGEEFALEFMWERVNPRQQYILNPSVEVNTESRPVDLQSMLGASRISGSEMGSDASLFPSIEKGEVQDPSGNPPIREEKPIDQLPQSVSRNSLKYSRSQSFRTHSSLGSSSGSSRRLKLLCSFGGTIMPRPSDRKLRYVGGETRIIRINKDISWEELKQKASVMYNEPHSIKYQLPGEDLDALVSVSSDE...

XP_057812046.1
MEQVKGNFLKDQQKNPEHISYNSVEKRNEGVGNLNQRFNQDPSNYMNMNIRPADLNASAGARPVLNYSIQTGEEFALEFMWERVNPRQQYILNPSVEVNTESRPVDLQSMLGASRISGSEMGSDASLFPSIEKGEVQDPSGNPPIREEKPIDQLPQSVSRNSLKYSRSQSFRTHSSLGSSSGSSRRLKLLCSFGGTIMPRPSDRKLRYVGGETRIIRINKDISWEELKQKASVMYNEPHSIKYQLPGEDLDALVSVSSDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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