Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002496`

染色体: Chr05 坐标: 27688327-27691268 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002496`
名称	SmilChr05G002496
描述	uncharacterized SmilChr05G002496
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27688327 - 27691268 / `-`

ID 对照

NCBI Gene ID	`LOC131026268`
GeneID	`131026268`
locus_tag	`-`
NCBI Name	`LOC131026268`
原始查询	`SmilChr05G002496`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyadenylate-binding protein 1-B-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827739]; symbol=AT4G19950; hit=AT4G19950; species=arabidopsis; confidence=high
产物	polyadenylate-binding protein 1-B-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827739]; symbol=AT4G19950; hit=AT4G19950; species=arabidopsis; confidence=high
Arabidopsis	`AT4G19950` (AT4G19950) polyadenylate-binding protein 1-B-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827739] identity=65.4; qcov=0.98; evalue=1.4e-121; confidence=high
Rice	`Os01g0800300` - identity=43.8; qcov=1; evalue=4.84e-65; confidence=medium
GO	-
KEGG	-
Pfam	PF29520 (DUF8558)
InterPro	-
eggNOG	-
NR	GeneID:131026268

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057812052.1`
2	Cell membrane	细胞膜	0.40000	`XP_057812050.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057812052.1`
4	Vacuole	液泡	0.40000	`XP_057812050.1`
5	Vacuole membrane	液泡膜	0.40000	`XP_057812050.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27690258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,C45,C82
`Chr5:27690285`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	1	B84
`Chr5:27690285`	`G`	`GT`	1bp_insertion	CDS_variant	1	B84
`Chr5:27690449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C34,C62
`Chr5:27690514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:27690527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:27690591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:27690612`	`CA`	`C`	1bp_deletion	frameshift_variant	1	D11
`Chr5:27690612`	`CA`	`C`	1bp_deletion	CDS_variant	1	D11
`Chr5:27690642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C34,C62,C73
`Chr5:27690683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr5:27690717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812050.1

314 aa

157

314

DUF8558

PF29520 DUF8558 1-311 aa

XP_057812052.1

298 aa

149

298

DUF8558

PF29520 DUF8558 1-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812050.1`	Pfam	`PF29520`	DUF8558	Domain	1	311	1.4e-90	304.7	Domain of unknown function (DUF8558)
`XP_057812052.1`	Pfam	`PF29520`	DUF8558	Domain	1	285	6.9e-77	259.7	Domain of unknown function (DUF8558)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956069.1
TACATGTAGACTAATGAGTAATCCTTGTAACACATAGGCGGCGCCTCCCGCCGTCACCGCCGCTCTACTGCCGCCTTTATTTCTCTCCCCTCTTTTTCCACTCCCTTAATTACAGTTAACAATCTGCACTTGTCGTTTAATTTTTCCAGCTCTAATTTTTGTGCAATGGATCTAGAGGCGGAGAAGCTTCAGAGCTTGAGCGTCTCCGACATCCTCAAGGAATCAATTTCCATCCGCAAGCGATCCCCCAAAACTTTCTA...

XM_057956067.1
ACATGTAGACTAATGAGTAATCCTTGTAACACATAGGCGGCGCCTCCCGCCGTCACCGCCGCTCTACTGCCGCCTTTATTTCTCTCCCCTCTTTTTCCACTCCCTTAATTACAGTTAACAATCTGCACTTGTCGTTTAATTTTTCCAGCTCTAATTTTTGTGCAATGGATCTAGAGGCGGAGAAGCTTCAGAGCTTGAGCGTCTCCGACATCCTCAAGGAATCAATTTCCATCCGCAAGCGATCCCCCAAAACTTTCTAT...

CDS

2 records

下载 CDS FASTA

LOC131026268
ATGGATCTAGAGGCGGAGAAGCTTCAGAGCTTGAGCGTCTCCGACATCCTCAAGGAATCAATTTCCATCCGCAAGCGATCCCCCAAAACTTTCTATCTCATTACTCTAACCCTAATTTTCCCCATTTCCTTCGCCATCCTAGCTCACTCGCTCTCCACCCACCCCATCATCTCGCAACTCCAATCCGACACCGCCGCCGTCGCCGCATCCAACTGGTCGAGGCTTCTGATTTTCCAGTTCTTCTACCTCATCTTCATCTT...

Protein

2 records

下载 Protein FASTA

XP_057812050.1
MDLEAEKLQSLSVSDILKESISIRKRSPKTFYLITLTLIFPISFAILAHSLSTHPIISQLQSDTAAVAASNWSRLLIFQFFYLIFIFAFSFLSTAAVVSLYTSKPVSFSSTVAVVPSVFRRLFVTFLWIALLMVAYNIVFLRFLVLLVYAVDTQNVILFVFSILVVFALFLGLHVYISAWWHLASVVSVLEPVYGFTAMKKSYELLKERTYNGFTIVFDYLTFCRVINGLFGSVVVHGGDDYGVLSRIMVGGFLVGVLVI...

XP_057812052.1
MDLEAEKLQSLSVSDILKESISIRKRSPKTFYLITLTLIFPISFAILAHSLSTHPIISQLQSDTAAVAASNWSRLLIFQFFYLIFIFAFSFLSTAAVVSLYTSKPVSFSSTVAVVPSVFRRLFVTFLWIALLMVAYNIVFLRFLVLLVYAVDTQNVILFVFSILVVFALFLGLHVYISAWWHLASVVSVLEPVYGFTAMKKSYELLKERTYNGFTIVFDYLTFCRVINGLFGSVVVHGGDDYGVLSRIMVGGFLVGVLVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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