Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002497`

染色体: Chr05 坐标: 27693586-27697120 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002497`
名称	SmilChr05G002497
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27693586 - 27697120 / `+`

ID 对照

NCBI Gene ID	`LOC131026270`
GeneID	`131026270`
locus_tag	`-`
NCBI Name	`LOC131026270`
原始查询	`SmilChr05G002497`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT3G18670` (AT3G18670) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821398] identity=33.1; qcov=1.03; evalue=3.03e-91; confidence=low
Rice	`Os11g0251400` - identity=24; qcov=0.843; evalue=3.49e-18; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:131026270

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057812056.1`
2	Nucleus	细胞核	0.00000	`XP_057812056.1`
3	Chromosome	染色体	0.00000	`XP_057812056.1`
4	Centromere	着丝粒	0.00000	`XP_057812056.1`
5	Chromatin	染色质	0.00000	`XP_057812056.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27695191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:27695262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:27695951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B90
`Chr5:27696252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:27696293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,D1
`Chr5:27696311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:27696725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr5:27696791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812056.1

561 aa

280

561

Ank_2

Ank

PGG

PF12796 Ank_2 95-161 aa PF00023 Ank 105-131 aa PF13962 PGG 398-507 aa

XP_057812057.1

561 aa

280

561

Ank_2

Ank

PGG

PF12796 Ank_2 95-161 aa PF00023 Ank 105-131 aa PF13962 PGG 398-507 aa

XP_057812058.1

561 aa

280

561

Ank_2

Ank

PGG

PF12796 Ank_2 95-161 aa PF00023 Ank 105-131 aa PF13962 PGG 398-507 aa

XP_057812059.1

546 aa

273

546

Ank_2

Ank

PGG

PF12796 Ank_2 95-161 aa PF00023 Ank 105-131 aa PF13962 PGG 383-492 aa

XP_057812060.1

523 aa

262

523

Ank_2

Ank

PGG

PF12796 Ank_2 36-123 aa PF00023 Ank 67-93 aa PF13962 PGG 360-469 aa

XP_057812061.1

523 aa

262

523

Ank_2

Ank

PGG

PF12796 Ank_2 36-123 aa PF00023 Ank 67-93 aa PF13962 PGG 360-469 aa

XP_057812062.1

523 aa

262

523

Ank_2

Ank

PGG

PF12796 Ank_2 36-123 aa PF00023 Ank 67-93 aa PF13962 PGG 360-469 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812056.1`	Pfam	`PF12796`	Ank_2	Repeat	95	161	2.3e-20	73.6	Ankyrin repeats (3 copies)
`XP_057812056.1`	Pfam	`PF00023`	Ank	Repeat	105	131	1.5e-10	41.4	Ankyrin repeat
`XP_057812056.1`	Pfam	`PF13962`	PGG	Domain	398	507	4.9e-23	81.8	Domain of unknown function
`XP_057812057.1`	Pfam	`PF12796`	Ank_2	Repeat	95	161	2.3e-20	73.6	Ankyrin repeats (3 copies)
`XP_057812057.1`	Pfam	`PF00023`	Ank	Repeat	105	131	1.5e-10	41.4	Ankyrin repeat
`XP_057812057.1`	Pfam	`PF13962`	PGG	Domain	398	507	4.9e-23	81.8	Domain of unknown function
`XP_057812058.1`	Pfam	`PF12796`	Ank_2	Repeat	95	161	2.3e-20	73.6	Ankyrin repeats (3 copies)
`XP_057812058.1`	Pfam	`PF00023`	Ank	Repeat	105	131	1.5e-10	41.4	Ankyrin repeat
`XP_057812058.1`	Pfam	`PF13962`	PGG	Domain	398	507	4.9e-23	81.8	Domain of unknown function
`XP_057812059.1`	Pfam	`PF12796`	Ank_2	Repeat	95	161	3.3e-20	73.1	Ankyrin repeats (3 copies)
`XP_057812059.1`	Pfam	`PF00023`	Ank	Repeat	105	131	1.3e-10	41.7	Ankyrin repeat
`XP_057812059.1`	Pfam	`PF13962`	PGG	Domain	383	492	4.7e-23	81.9	Domain of unknown function
`XP_057812060.1`	Pfam	`PF12796`	Ank_2	Repeat	36	123	2.3e-19	70.4	Ankyrin repeats (3 copies)
`XP_057812060.1`	Pfam	`PF00023`	Ank	Repeat	67	93	1.1e-10	41.9	Ankyrin repeat
`XP_057812060.1`	Pfam	`PF13962`	PGG	Domain	360	469	4.4e-23	82.0	Domain of unknown function
`XP_057812061.1`	Pfam	`PF12796`	Ank_2	Repeat	36	123	2.3e-19	70.4	Ankyrin repeats (3 copies)
`XP_057812061.1`	Pfam	`PF00023`	Ank	Repeat	67	93	1.1e-10	41.9	Ankyrin repeat
`XP_057812061.1`	Pfam	`PF13962`	PGG	Domain	360	469	4.4e-23	82.0	Domain of unknown function
`XP_057812062.1`	Pfam	`PF12796`	Ank_2	Repeat	36	123	2.3e-19	70.4	Ankyrin repeats (3 copies)
`XP_057812062.1`	Pfam	`PF00023`	Ank	Repeat	67	93	1.1e-10	41.9	Ankyrin repeat
`XP_057812062.1`	Pfam	`PF13962`	PGG	Domain	360	469	4.4e-23	82.0	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057956075.1
ACAAAATGGGAAATTACGAAGAGATTTCAGCTGAAGAAAATATTTTAAAAGATTTTCCACTTTCACTCTTTATAATTAGGGTTTGCAATATTCCATTCCATCTCACTAGCATGCAGTGAGAAGTATTCGATCGAACGTGCGTATTCCATGGGGAATTTTATCTCAAAAACACTGAATAAACCGAAACATGAGGGGATACATTTGGAACAAATAACCACGGCATATGATAATTCCTCACCTCTTTTAGGCAAAAGAAAATC...

XM_057956079.1
ACAAAATGGGAAATTACGAAGAGATTTCAGCTGAAGAAAATATTTTAAAAGATTTTCCACTTTCACTCTTTATAATTAGGGTTTGCAATATTCCATTCCATCTCACTAGCATGCAGTGAGAAGTATTCGATCGAACGTGCGTATTCCATGGGGAATTTTATCTCAAAAACACTGAATAAACCGAAACATGAGGGGATACATTTGGAACAAATAACCACGGCATATGATAATTCCTCACCTCTTTGGTGATTGGGATGCTG...

CDS

7 records

下载 CDS FASTA

LOC131026270
ATGGGGAATTTTATCTCAAAAACACTGAATAAACCGAAACATGAGGGGATACATTTGGAACAAATAACCACGGCATATGATAATTCCTCACCTCTTTTAGGCAAAAGAAAATCACTATACAAAGCTGCATTGAAGGGTGATTGGGATGCTGCAGAAGAGGTATTGAAAAACGACGAAAGCTTGATGAAAAGTCCCATAACAGATGGAGGGGAAATTGCACTGCATGTTGCTGCTGTCGAAGGCCATCAAGATTTCGTCTC...

Protein

7 records

下载 Protein FASTA

XP_057812056.1
MGNFISKTLNKPKHEGIHLEQITTAYDNSSPLLGKRKSLYKAALKGDWDAAEEVLKNDESLMKSPITDGGEIALHVAAVEGHQDFVSKLLPMMEIDDVGIPNGKGCTALCFAAAVGHIRIAQIMLEKNPNLATIKGEEGVRPLYMAALQGFSEMAQFLYDYSHIGSWTPQQKINLLTSAIDSELYDLARRIVNEDKTLAVAEDGCGNTALQVLAQKPGFCCDMNSARRGDPYRLLDCLWNAAESCEEDTEAAVDTSTLFF...

XP_057812057.1
MGNFISKTLNKPKHEGIHLEQITTAYDNSSPLLGKRKSLYKAALKGDWDAAEEVLKNDESLMKSPITDGGEIALHVAAVEGHQDFVSKLLPMMEIDDVGIPNGKGCTALCFAAAVGHIRIAQIMLEKNPNLATIKGEEGVRPLYMAALQGFSEMAQFLYDYSHIGSWTPQQKINLLTSAIDSELYDLARRIVNEDKTLAVAEDGCGNTALQVLAQKPGFCCDMNSARRGDPYRLLDCLWNAAESCEEDTEAAVDTSTLFF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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