Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002524`

染色体: Chr05 坐标: 28085535-28090191 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002524`
名称	SmilChr05G002524
描述	exocyst complex component EXO84C
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	28085535 - 28090191 / `+`

ID 对照

NCBI Gene ID	`LOC131026286`
GeneID	`131026286`
locus_tag	`-`
NCBI Name	`LOC131026286`
原始查询	`SmilChr05G002524`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exocyst complex component EXO84C
产物	exocyst complex component EXO84C
Arabidopsis	`AT1G10180` (AT1G10180) LOW protein: exocyst complex component-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837556] identity=55.7; qcov=0.988; evalue=0; confidence=high
Rice	`Os07g0568000` (OJ1092_A07.123) - identity=54.7; qcov=0.968; evalue=0; confidence=high
GO	GO:0000145 (exocyst); GO:0006887 (exocytosis); GO:0006893 (Golgi to plasma membrane transport); GO:0008104 (intracellular protein localization)
KEGG	-
Pfam	PF16528 (Exo84_C); PF27696 (EXO84_helical)
InterPro	-
eggNOG	-
NR	GeneID:131026286

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057812081.1`
2	Trans-golgi network	Trans-golgi network	0.60000	`XP_057812081.1`
3	Cytoplasm	细胞质	0.40000	`XP_057812081.1`
4	Golgi apparatus	高尔基体	0.40000	`XP_057812081.1`
5	Phragmoplast	Phragmoplast	0.40000	`XP_057812082.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:28087252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr5:28087539`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B17,B2,C35
`Chr5:28087540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B59,B89,B9,C82
`Chr5:28087693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B55,B56,B65,B96
`Chr5:28088158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,C11,C69
`Chr5:28088179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,C67
`Chr5:28088438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B7,C11,C69
`Chr5:28088494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:28088768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr5:28088891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:28089333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:28089378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812081.1

783 aa

392

783

Exo84_C

EXO84_helical

PF16528 Exo84_C 142-339 aa PF27696 EXO84_helical 378-546 aa

XP_057812082.1

741 aa

370

741

Exo84_C

EXO84_helical

PF16528 Exo84_C 100-297 aa PF27696 EXO84_helical 336-504 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812081.1`	Pfam	`PF16528`	Exo84_C	Repeat	142	339	9.2e-11	42.7	Exocyst component 84 C-terminal
`XP_057812081.1`	Pfam	`PF27696`	EXO84_helical	Domain	378	546	2.8e-52	177.6	EXO84 helical domain
`XP_057812082.1`	Pfam	`PF16528`	Exo84_C	Repeat	100	297	8e-11	42.8	Exocyst component 84 C-terminal
`XP_057812082.1`	Pfam	`PF27696`	EXO84_helical	Domain	336	504	2.4e-52	177.8	EXO84 helical domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956098.1
AATAATGCCCGAATATTTAAAATTAATTAGCGCTGGATAATAAAAATTGCAATAAATTAGACAAGGAAAATAACACAAAAATTCTTCGCTCTTTCAAACCCAAAACCTCTGTATAAGCAAAAACCAGAACCTTGCTGTTAAGTGCTCGATTTCTCCACTTGTTTTCCGACATTGCTGCTACTCTCGCTGTGGCGGAAGCGTCTTCAGTTCTCTGCAACTCCTCCGTGAAGAGCAGAAGAAAGAGAGGATGAAAATGGTAG...

XM_057956099.1
TAAATTAGACAAGGAAAATAACACAAAAATTCTTCGCTCTTTCAAACCCAAAACCTCTGTATAAGCAAAAACCAGAACCTTGCTGTTAAGTGCTCGATTTCTCCACTTGTTTTCCGACATTGCTGCTACTCTCGCTGTGGCGGAAGCGTCTTCAGTTCTCTGCAACTCCTCCGTGAAGAGCAGAAGAAAGAGAGGATGAAAATGGTAGAAAGCAGCGAAGAAGAAGATGATTTCCCCTCAATGGAAAGCGTCACGCCTCA...

CDS

2 records

下载 CDS FASTA

LOC131026286
ATGAAAATGGTAGAAAGCAGCGAAGAAGAAGATGATTTCCCCTCAATGGAAAGCGTCACGCCTCAGTCCAAGATCGACACAGTTTATCAGTCTAAAACTGAAAAGGGCATCAGAAAGATCTGTTTTGAGCTATTGGATTTGAAAGATGCAGTTGAGAACTTGTGCAGTAATACTCGCACAAAGTATTTGGCCTTTTTAAGGTTATCTGATGAAGTGGTTGAAATGAAGCATGAGTTAAATGAGCTCCAAAAGCATATATC...

LOC131026286
ATGATTTCCCCTCAATGGAAAGCGTCACGCCTCAGTCCAAGATCGACACAGTTTATCAGTCTAAAACTGAAAAGGTTATCTGATGAAGTGGTTGAAATGAAGCATGAGTTAAATGAGCTCCAAAAGCATATATCTTCCCATGGGATTCTTATCCAGGATCTAATGAGTGGCGTGTCTCATGAATTGGATGAATGGAGTCGAGCTGGTGGAGATCTCTTGGAGGCTGATGACAACTCTCTAACTAATGAAGCTAATGGTAT...

Protein

2 records

下载 Protein FASTA

XP_057812081.1
MKMVESSEEEDDFPSMESVTPQSKIDTVYQSKTEKGIRKICFELLDLKDAVENLCSNTRTKYLAFLRLSDEVVEMKHELNELQKHISSHGILIQDLMSGVSHELDEWSRAGGDLLEADDNSLTNEANGIFSTEVEDRRMLFLEHVDVLLAEHKIEEAIDAIDTEERSYPELKGSGDSTTDESSSFKSALSKRKARLENQLVEISRQPSVGILELRKVLSSLLKLGKGPLAHQIFLKSYGSRLQRSIEDFLALCPCYPETY...

XP_057812082.1
MISPQWKASRLSPRSTQFISLKLKRLSDEVVEMKHELNELQKHISSHGILIQDLMSGVSHELDEWSRAGGDLLEADDNSLTNEANGIFSTEVEDRRMLFLEHVDVLLAEHKIEEAIDAIDTEERSYPELKGSGDSTTDESSSFKSALSKRKARLENQLVEISRQPSVGILELRKVLSSLLKLGKGPLAHQIFLKSYGSRLQRSIEDFLALCPCYPETYSATLSNLVFSMISLATKDSGQMFGDNPLYSNKIVQWAEWEIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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