Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002535`

染色体: Chr05 坐标: 28281760-28304588 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002535`
名称	SmilChr05G002535
描述	cytochrome c6, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	28281760 - 28304588 / `-`

ID 对照

NCBI Gene ID	`LOC131026320`
GeneID	`131026320`
locus_tag	`-`
NCBI Name	`LOC131026320`
原始查询	`SmilChr05G002535`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome c6, chloroplastic
产物	cytochrome c6%2C chloroplastic
Arabidopsis	`AT5G45040` (CYTC6A) Cytochrome c [Source:NCBI gene (formerly Entrezgene);Acc:834535] identity=73.7; qcov=0.774; evalue=2.8e-72; confidence=high
Rice	`Os07g0567400` - identity=73.9; qcov=0.13; evalue=1.17e-06; confidence=weak
GO	GO:0005506 (iron ion binding); GO:0009055 (electron transfer activity); GO:0020037 (heme binding)
KEGG	smil00195 (Photosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00034 (Cytochrom_C); PF13442 (Cytochrome_CBB3)
InterPro	-
eggNOG	-
NR	GeneID:131026320

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057812149.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057812149.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057812149.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057812151.1`
5	Nucleus	细胞核	0.00000	`XP_057812149.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:28281881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,B9
`Chr5:28281883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,B9,C14
`Chr5:28281892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C11
`Chr5:28281894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:28281897`	`C`	`T`	EMS_canonical_SNV	stop_gained	25	A11,A18,A2,A3,B105,B16,B25,B37,B6,B77,B79,B80,B82,B93,B99,C32,C39,C4,C67,C68,C75,C78,C87,D10,D6
`Chr5:28281959`	`G`	`A`	EMS_canonical_SNV	stop_gained	11	B107,B122,B128,B33,B42,B43,B61,C43,C49,C52,C84
`Chr5:28281995`	`G`	`A`	EMS_canonical_SNV	stop_gained	31	A1,A19,B101,B103,B108,B113,B122,B131,B132,B140,B15,B26,B29,B46,B61,B64,B69,B8,B83,B95,C19,C24,C32,C37,C38,C44,C55,C68,C71,C74,D8
`Chr5:28282021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr5:28282027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr5:28303166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:28303168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr5:28303220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812149.1

185 aa

185

Cytochrome_CBB3

PF13442 Cytochrome_CBB3 78-140 aa

XP_057812150.1

182 aa

182

Cytochrome_CBB3

PF13442 Cytochrome_CBB3 75-137 aa

XP_057812151.1

180 aa

180

Cytochrome_CBB3

Cytochrom_C

PF13442 Cytochrome_CBB3 78-141 aa PF00034 Cytochrom_C 79-166 aa

XP_057812152.1

177 aa

177

Cytochrome_CBB3

Cytochrom_C

PF13442 Cytochrome_CBB3 75-138 aa PF00034 Cytochrom_C 76-163 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812149.1`	Pfam	`PF13442`	Cytochrome_CBB3	Domain	78	140	3.5e-08	34.4	Cytochrome C oxidase, cbb3-type, subunit III
`XP_057812150.1`	Pfam	`PF13442`	Cytochrome_CBB3	Domain	75	137	3.4e-08	34.4	Cytochrome C oxidase, cbb3-type, subunit III
`XP_057812151.1`	Pfam	`PF13442`	Cytochrome_CBB3	Domain	78	141	7.3e-11	43.0	Cytochrome C oxidase, cbb3-type, subunit III
`XP_057812151.1`	Pfam	`PF00034`	Cytochrom_C	Domain	79	166	1.7e-06	29.9	Cytochrome c
`XP_057812152.1`	Pfam	`PF13442`	Cytochrome_CBB3	Domain	75	138	7e-11	43.0	Cytochrome C oxidase, cbb3-type, subunit III
`XP_057812152.1`	Pfam	`PF00034`	Cytochrom_C	Domain	76	163	1.6e-06	30.0	Cytochrome c

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057956166.1
AAGTGAGCATGTCACAAGTCCTTATATCTTAGTATTAATGCTATGTCGTTCTATTCAATTTGAACCAAGAAATTCTGACACTATTACTGCTTAGAATTCCACAGGAGGGCAAAGACAGGAAAACATGCAACTAGCATCAGTGGCAGTGGCACCTAGCAAAGCTTCTTCTCTCTCTAAACAGTTTTTGCAGCGGAAGAAATTCAAGATTTTGGGGGAGCATGAAGCAAATGGCAACTTCCACAAACAAGATAAGGTGAAGC...

XM_057956167.1
ACAAGTCCTTATATCTTAGTATTAATGCTATGTCGTTCTATTCAATTTGAACCAAGAAATTCTGACACTATTACTGCTTAGAATTCCACAGGAGGGCAAAGACAGGAAAACATGCAACTAGCATCAGTGGCAGTGGCACCTAGCAAAGCTTCTTCTCTCTCTAAACAGCGGAAGAAATTCAAGATTTTGGGGGAGCATGAAGCAAATGGCAACTTCCACAAACAAGATAAGGTGAAGCTGTTGAAATTCTTGGCCCCACA...

CDS

4 records

下载 CDS FASTA

LOC131026320
ATGCAACTAGCATCAGTGGCAGTGGCACCTAGCAAAGCTTCTTCTCTCTCTAAACAGCGGAAGAAATTCAAGATTTTGGGGGAGCATGAAGCAAATGGCAACTTCCACAAACAAGATAAGGTGAAGCTGTTGAAATTCTTGGCCCCACATCTTGTGGCTGCAGTTGTAACCTTATCTACTCCCATCTCCAACCCCCCTGTGTCATTGGGAGAAACACTAGATGTGCATAAAGGCGCCACCTTGTTCCGCCGGTCTTGCAT...

LOC131026320
ATGCAACTAGCATCAGTGGCAGTGGCACCTAGCAAAGCTTCTTCTCTCTCTAAACAGTTTTTGCAGCGGAAGAAATTCAAGATTTTGGGGGAGCATGAAGCAAATGGCAACTTCCACAAACAAGATAAGGTGAAGCTGTTGAAATTCTTGGCCCCACATCTTGTGGCTGCAGTTGTAACCTTATCTACTCCCATCTCCAACCCCCCTGTGTCATTGGGAGAAACACTAGATGTGCATAAAGGCGCCACCTTGTTCCGCCG...

Protein

4 records

下载 Protein FASTA

XP_057812149.1
MQLASVAVAPSKASSLSKQFLQRKKFKILGEHEANGNFHKQDKVKLLKFLAPHLVAAVVTLSTPISNPPVSLGETLDVHKGATLFRRSCIGCHDAGGNIIQPGATLFSNDLQRNGVDTEEEIYRVTYHGKGRMPSEARRMKFSYEQMCYILPSRIRPQLQRLVPNGSYGASYDRCAEWKRHFSRS

XP_057812150.1
MQLASVAVAPSKASSLSKQRKKFKILGEHEANGNFHKQDKVKLLKFLAPHLVAAVVTLSTPISNPPVSLGETLDVHKGATLFRRSCIGCHDAGGNIIQPGATLFSNDLQRNGVDTEEEIYRVTYHGKGRMPSEARRMKFSYEQMCYILPSRIRPQLQRLVPNGSYGASYDRCAEWKRHFSRS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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