当前解析结果
SmilChr05G002538| 统一新 Gene ID | SmilChr05G002538 |
|---|---|
| 名称 | SmilChr05G002538 |
| 描述 | uncharacterized SmilChr05G002538 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 28327685 - 28330099 / - |
| NCBI Gene ID | LOC131026300 |
|---|---|
| GeneID | 131026300 |
| locus_tag | - |
| NCBI Name | LOC131026300 |
| 原始查询 | SmilChr05G002538 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Glutathione S-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827734]; symbol=AT4G19880; hit=AT4G19880; species=arabidopsis; confidence=high |
| 产物 | Glutathione S-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827734]; symbol=AT4G19880; hit=AT4G19880; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G19880 (AT4G19880)Glutathione S-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827734] identity=75.7; qcov=0.903; evalue=0; confidence=high |
| Rice | Os02g0814800- identity=40; qcov=0.818; evalue=3.56e-72; confidence=medium |
| GO | GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00043 (GST_C); PF13409 (GST_N_2); PF13410 (GST_C_2); PF14497 (GST_C_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026300 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057812112.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057812112.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057812112.1 |
| 4 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057812112.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057812112.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:28327845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr5:28327995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B101,B122,B2 |
Chr5:28328332 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B80 |
Chr5:28328332 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B80 |
Chr5:28328543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B128,C39,C61 |
Chr5:28328971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B2 |
Chr5:28329889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr5:28329961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812112.1PF13409
GST_N_2 97-203 aa
PF00043
GST_C 245-327 aa
PF14497
GST_C_3 248-330 aa
PF13410
GST_C_2 251-321 aa
XP_057812113.1PF13409
GST_N_2 96-202 aa
PF00043
GST_C 244-326 aa
PF14497
GST_C_3 247-329 aa
PF13410
GST_C_2 250-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812112.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 97 | 203 | 1e-09 | 39.6 | Glutathione S-transferase, N-terminal domain |
XP_057812112.1 |
Pfam | PF00043 |
GST_C | Domain | 245 | 327 | 1.9e-08 | 35.2 | Glutathione S-transferase, C-terminal domain |
XP_057812112.1 |
Pfam | PF14497 |
GST_C_3 | Domain | 248 | 330 | 2e-06 | 28.6 | Glutathione S-transferase, C-terminal domain |
XP_057812112.1 |
Pfam | PF13410 |
GST_C_2 | Domain | 251 | 321 | 2.7e-13 | 50.5 | Glutathione S-transferase, C-terminal domain |
XP_057812113.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 96 | 202 | 1e-09 | 39.6 | Glutathione S-transferase, N-terminal domain |
XP_057812113.1 |
Pfam | PF00043 |
GST_C | Domain | 244 | 326 | 1.8e-08 | 35.2 | Glutathione S-transferase, C-terminal domain |
XP_057812113.1 |
Pfam | PF14497 |
GST_C_3 | Domain | 247 | 329 | 1.8e-06 | 28.8 | Glutathione S-transferase, C-terminal domain |
XP_057812113.1 |
Pfam | PF13410 |
GST_C_2 | Domain | 250 | 320 | 2.7e-13 | 50.5 | Glutathione S-transferase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。