Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002553`

染色体: Chr05 坐标: 28642185-28645646 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002553`
名称	SmilChr05G002553
描述	BTB/POZ domain and ankyrin repeat-containing protein NPR1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	28642185 - 28645646 / `+`

ID 对照

NCBI Gene ID	`LOC131026289`
GeneID	`131026289`
locus_tag	`-`
NCBI Name	`LOC131026289`
原始查询	`SmilChr05G002553`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ domain and ankyrin repeat-containing protein NPR1-like
产物	BTB/POZ domain and ankyrin repeat-containing protein NPR1-like
Arabidopsis	`AT5G45110` (NPR3) NPR1-like protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:834545] identity=57.8; qcov=0.898; evalue=0; confidence=high
Rice	`Os01g0767900` (OsNH2) - identity=55.7; qcov=0.92; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0009862 (systemic acquired resistance, salicylic acid mediated signaling pathway); GO:0042742 (defense response to bacterium); GO:0050832 (defense response to fungus); GO:2000022 (regulation of jasmonic acid mediated signaling pathway); GO:2000031 (regulation of salicylic acid mediated signaling pathway)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00651 (BTB); PF11900 (DUF3420); PF12313 (NPR1_like_C); PF12796 (Ank_2)
InterPro	-
eggNOG	-
NR	GeneID:131026289

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057812093.1`
2	Cytosol	细胞质基质	1.00000	`XP_057812093.1`
3	Nucleus	细胞核	0.20000	`XP_057812093.1`
4	Chromosome	染色体	0.00000	`XP_057812093.1`
5	Centromere	着丝粒	0.00000	`XP_057812093.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:28643974`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C52,C84
`Chr5:28644155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr5:28644206`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B20
`Chr5:28644206`	`TG`	`T`	1bp_deletion	CDS_variant	1	B20
`Chr5:28644618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr5:28644878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812093.1

586 aa

293

586

BTB

DUF3420

Ank_2

NPR1_like_C

PF00651 BTB 60-141 aa PF11900 DUF3420 226-274 aa PF12796 Ank_2 274-357 aa PF12313 NPR1_like_C 373-574 aa

XP_057812094.1

586 aa

293

586

BTB

DUF3420

Ank_2

NPR1_like_C

PF00651 BTB 60-141 aa PF11900 DUF3420 226-274 aa PF12796 Ank_2 274-357 aa PF12313 NPR1_like_C 373-574 aa

XP_057812095.1

586 aa

293

586

BTB

DUF3420

Ank_2

NPR1_like_C

PF00651 BTB 60-141 aa PF11900 DUF3420 226-274 aa PF12796 Ank_2 274-357 aa PF12313 NPR1_like_C 373-574 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812093.1`	Pfam	`PF00651`	BTB	Domain	60	141	1.2e-11	45.5	BTB/POZ domain
`XP_057812093.1`	Pfam	`PF11900`	DUF3420	Repeat	226	274	1.4e-08	35.4	Domain of unknown function (DUF3420)
`XP_057812093.1`	Pfam	`PF12796`	Ank_2	Repeat	274	357	9.7e-08	33.2	Ankyrin repeats (3 copies)
`XP_057812093.1`	Pfam	`PF12313`	NPR1_like_C	Family	373	574	3.1e-84	282.3	NPR1/NIM1 like defence protein C terminal
`XP_057812094.1`	Pfam	`PF00651`	BTB	Domain	60	141	1.2e-11	45.5	BTB/POZ domain
`XP_057812094.1`	Pfam	`PF11900`	DUF3420	Repeat	226	274	1.4e-08	35.4	Domain of unknown function (DUF3420)
`XP_057812094.1`	Pfam	`PF12796`	Ank_2	Repeat	274	357	9.7e-08	33.2	Ankyrin repeats (3 copies)
`XP_057812094.1`	Pfam	`PF12313`	NPR1_like_C	Family	373	574	3.1e-84	282.3	NPR1/NIM1 like defence protein C terminal
`XP_057812095.1`	Pfam	`PF00651`	BTB	Domain	60	141	1.2e-11	45.5	BTB/POZ domain
`XP_057812095.1`	Pfam	`PF11900`	DUF3420	Repeat	226	274	1.4e-08	35.4	Domain of unknown function (DUF3420)
`XP_057812095.1`	Pfam	`PF12796`	Ank_2	Repeat	274	357	9.7e-08	33.2	Ankyrin repeats (3 copies)
`XP_057812095.1`	Pfam	`PF12313`	NPR1_like_C	Family	373	574	3.1e-84	282.3	NPR1/NIM1 like defence protein C terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057956112.1
TCTCGTATTCCTACGTAGAGGAACAAGTGGCGACTGTAAATCAAAAGTTTCAGCAGTCTACTTAGATAATTTCTTTGATTCCCATCACGAAATTTCACTAGACCCATGTGGGTCCCTCTTTGGACTGTTTGTTTCCTTGAATTCTAAGCCTTAATTTTCTGTTGGGTGGCCTCTGGATCTAGTTCAATGCCTGTTTTTGATGCTCTCTGATTGCAAATTCTCCACCAAACCAATTCGAACTCAGCTCGATAAGGGTTGAT...

XM_057956111.1
TCTCGTATTCCTACGTAGAGGAACAAGTGGCGACTGTAAATCAAAAGTTTCAGCAGTCTACTTAGATAATTTCTTTGATTCCCATCACGAAATTTCACTAGACCCATGTGGGTCCCTCTTTGGACTGTTTGTTTCCTTGAATTCTAAGCCTTAATTTTCTGTTGGGTGGCCTCTGGATCTAGTTCAATGCCTGTTTTTGATGCTCTCTGATTGCAAATTCTCCACCAAACCAATTCGAACTCAGCTCGATAAGGCGCGCC...

CDS

3 records

下载 CDS FASTA

LOC131026289
ATGGATACTTCTGCAGAGCCATCATCCTCCATCAGTTTCACCTCCCCCTCTCGTTTGTCGAATGGATCAACAACGAGTAACAAAATGTATGCTCCTGGTGGATCAGAGGCAGGGTTGAATCTTGAAATTATCAGTTTGAGTAAGTTGAGTTGCAATTTAGGGCAACTGTTGTCTGAATCCGGTGGTGACTTTAGTGATGCAGAGATTGTAGTAGAAGAGACTAGTGTGGGCGTGCACCGGTGTATTTTAGCTGCCCGGAG...

Protein

3 records

下载 Protein FASTA

XP_057812093.1
MDTSAEPSSSISFTSPSRLSNGSTTSNKMYAPGGSEAGLNLEIISLSKLSCNLGQLLSESGGDFSDAEIVVEETSVGVHRCILAARSKFFNDLLDKDKVLGGKEGKPRYYMTNLLPYGKVGYEAFVIFLSYLYTGKLRPSPLEVSTCVDSLCAHDACRPAIDFAVELMYASTIFQVSELVSLFQRRLVNLVGKAIVEDVIPILTVAFHCQLSQLLTVCIHRVAQSDLETIFIEKILPSSVAEDIRLLRLNFQAEQENQAP...

XP_057812094.1
MDTSAEPSSSISFTSPSRLSNGSTTSNKMYAPGGSEAGLNLEIISLSKLSCNLGQLLSESGGDFSDAEIVVEETSVGVHRCILAARSKFFNDLLDKDKVLGGKEGKPRYYMTNLLPYGKVGYEAFVIFLSYLYTGKLRPSPLEVSTCVDSLCAHDACRPAIDFAVELMYASTIFQVSELVSLFQRRLVNLVGKAIVEDVIPILTVAFHCQLSQLLTVCIHRVAQSDLETIFIEKILPSSVAEDIRLLRLNFQAEQENQAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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