Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002558`

染色体: Chr05 坐标: 28709105-28711785 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002558`
名称	SmilChr05G002558
描述	uncharacterized SmilChr05G002558
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	28709105 - 28711785 / `-`

ID 对照

NCBI Gene ID	`LOC131026305`
GeneID	`131026305`
locus_tag	`-`
NCBI Name	`LOC131026305`
原始查询	`SmilChr05G002558`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818133]; symbol=AT2G35640; hit=AT2G35640; species=arabidopsis; confidence=medium
产物	Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818133]; symbol=AT2G35640; hit=AT2G35640; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G35640` (AT2G35640) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818133] identity=43.9; qcov=1.09; evalue=3.57e-78; confidence=medium
Rice	`Os04g0670900` (SH4) - identity=50.7; qcov=0.503; evalue=5.27e-44; confidence=medium
GO	-
KEGG	-
Pfam	PF13837 (Myb_DNA-bind_4)
InterPro	-
eggNOG	-
NR	GeneID:131026305

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057812126.1`
2	Chromosome	染色体	0.00000	`XP_057812126.1`
3	Centromere	着丝粒	0.00000	`XP_057812126.1`
4	Chromatin	染色质	0.00000	`XP_057812126.1`
5	Telomere	端粒	0.00000	`XP_057812126.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:28710334`	`A`	`AG`	1bp_insertion	frameshift_variant	1	B42
`Chr5:28710334`	`A`	`AG`	1bp_insertion	CDS_variant	1	B42
`Chr5:28710515`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B13
`Chr5:28710515`	`TC`	`T`	1bp_deletion	CDS_variant	1	B13
`Chr5:28710601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:28710651`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812126.1

290 aa

145

290

Myb_DNA-bind_4

PF13837 Myb_DNA-bind_4 26-108 aa

XP_057812127.1

290 aa

145

290

Myb_DNA-bind_4

PF13837 Myb_DNA-bind_4 26-108 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812126.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	26	108	1.6e-11	45.2	Myb/SANT-like DNA-binding domain
`XP_057812127.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	26	108	1.6e-11	45.2	Myb/SANT-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956144.1
GTCTATAGGAGAGAGAGGGTCTTGATGTGAATTTTTCTTGAACTCGAAGAAGCTGCAACACTTATACAGCCCTCACGTGGTTTACCTTTAGACACGATCTTCTCTGTTACAGGCAGATTATTTTTTCGTTTCTGCTTTGTTTTTCAACAAAATGCATCTCCTTTCTAGCAACCTCGTATATATTAATCTAGTACTTAACCAGACTTACGTAACAAAGTAGATATCTGGAGTGAAGGATTAGTACTAAACCGCCACCATTT...

XM_057956143.1
GTCTATAGGAGAGAGAGGGTCTTGATGTGAATTTTTCTTGAACTCGAAGAAGCTGCAACACTTATACAGCCCTCACGTGGTTTACCTTTAGACACGATCTTCTCTGTTACAGGCAGATTATTTTTTCGTTTCTGCTTTGTTTTTCAACAAAATGCATCTCCTTTCTAGCAACCTCGTATATATTAATCTAGTACTTAACCAGACTTACGTAACAAAGTAGATATCTGGAGTGAAGGATTAGTACTAAACCGCCACCATTT...

CDS

2 records

下载 CDS FASTA

LOC131026305
ATGGATCTGACAATAGCTAAGGAAGGTGGGTTGGGCAGCGGCAGCGTGAGCGCGCAGCGCGACTACAGAAAGGGGAACTGGAACCTTCAAGAAACGATGGTGCTGATTGAGGCGAAAAAAATGGACGACGAGCGGCGGATGAAGCGGGTGGGAGACAGCACGGAGAGGGGGAAGCCGGCGGAGCTGCGGTGGAAGTGGGTGGAAGATTACTGCTGGAGTCACGGGTGTTTCAGGAGCCAGAACCAGTGCAATGACAAGTG...

Protein

2 records

下载 Protein FASTA

XP_057812126.1
MDLTIAKEGGLGSGSVSAQRDYRKGNWNLQETMVLIEAKKMDDERRMKRVGDSTERGKPAELRWKWVEDYCWSHGCFRSQNQCNDKWDNLMRDFKKVREFERRGADKSYWRMDKPERKDNNLPSNMLPQIYEALLAVVDRKAPPPPPPFLPQCPILPPPAILPPPPTSAHPLPTVDSDTSEYSGSPAKRRKRRGGGGEGTSGVAAATTLQEVGSAISKSASIIAEAIQSCEDREEERHKEMVNLHKRRLQIEETKAEMNR...

XP_057812127.1
MDLTIAKEGGLGSGSVSAQRDYRKGNWNLQETMVLIEAKKMDDERRMKRVGDSTERGKPAELRWKWVEDYCWSHGCFRSQNQCNDKWDNLMRDFKKVREFERRGADKSYWRMDKPERKDNNLPSNMLPQIYEALLAVVDRKAPPPPPPFLPQCPILPPPAILPPPPTSAHPLPTPDSDTSEYSGSPAKRRKRRGGGGEGTSGVAAATTLQEVGSAISKSASIIAEAIQSCEDREEERHKEMVNLHKRRLQIEETKAEMNR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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