当前解析结果
SmilChr05G002586| 统一新 Gene ID | SmilChr05G002586 |
|---|---|
| 名称 | SmilChr05G002586 |
| 描述 | uncharacterized SmilChr05G002586 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 29070556 - 29071161 / - |
| NCBI Gene ID | LOC131025763 |
|---|---|
| GeneID | 131025763 |
| locus_tag | - |
| NCBI Name | LOC131025763 |
| 原始查询 | SmilChr05G002586 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=31.8; qcov=0.532; evalue=5.76e-11; confidence=low |
| Rice | Os02g0463725- identity=31.9; qcov=0.592; evalue=9.21e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025763 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811532.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811532.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811532.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811532.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811532.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:29070638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr5:29070648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B69 |
Chr5:29070674 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B69 |
Chr5:29070720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,A9,C68 |
Chr5:29070849 |
G |
A |
EMS_canonical_SNV | stop_gained | 15 | A24,A4,A5,A9,B11,B15,B45,B95,C11,C26,C42,C44,C5,C74,C87 |
Chr5:29070850 |
A |
AT |
1bp_insertion | frameshift_variant | 16 | A21,A6,B1,B103,B105,B106,B121,B125,B58,B69,B87,C36,C71,C73,C79,D1 |
Chr5:29070874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:29070887 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C35 |
Chr5:29070887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr5:29070900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr5:29070918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C2 |
Chr5:29070949 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B102,C76 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。