Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002587`

染色体: Chr05 坐标: 29077360-29080438 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002587`
名称	SmilChr05G002587
描述	alpha-glucosidase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	29077360 - 29080438 / `+`

ID 对照

NCBI Gene ID	`LOC131026341`
GeneID	`131026341`
locus_tag	`-`
NCBI Name	`LOC131026341`
原始查询	`SmilChr05G002587`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-glucosidase-like
产物	alpha-glucosidase-like
Arabidopsis	`AT5G11720` (AT5G11720) Glycosyl hydrolases family 31 protein [Source:NCBI gene (formerly Entrezgene);Acc:831044] identity=61.6; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0675700` - identity=60; qcov=0.879; evalue=0; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01055 (Glyco_hydro_31_2nd); PF13802 (Gal_mutarotas_2); PF21365 (Glyco_hydro_31_3rd)
InterPro	-
eggNOG	-
NR	GeneID:131026341

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057812181.1`
2	Secreted	分泌到胞外	0.20000	`XP_057812181.1`
3	Nucleus	细胞核	0.00000	`XP_057812181.1`
4	Chromosome	染色体	0.00000	`XP_057812181.1`
5	Centromere	着丝粒	0.00000	`XP_057812181.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:29077562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B105,B49,D3
`Chr5:29077854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr5:29077978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:29077993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B29,B73,B97,D8
`Chr5:29078125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr5:29078389`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,C15,C33,C61
`Chr5:29078418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B55,C64,C66
`Chr5:29078419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B55,C64,C66
`Chr5:29078421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,B9
`Chr5:29078444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,B55,C66
`Chr5:29078590`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B60
`Chr5:29078590`	`TG`	`T`	1bp_deletion	CDS_variant	1	B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812181.1

882 aa

441

882

Gal_mutarotas_2

Glyco_hydro_31_2nd

Glyco_hydro_31_3rd

PF13802 Gal_mutarotas_2 161-241 aa PF01055 Glyco_hydro_31_2nd 283-632 aa PF21365 Glyco_hydro_31_3rd 640-729 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812181.1`	Pfam	`PF13802`	Gal_mutarotas_2	Domain	161	241	2.1e-12	48.4	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain
`XP_057812181.1`	Pfam	`PF01055`	Glyco_hydro_31_2nd	Domain	283	632	7.8e-126	420.5	Glycosyl hydrolases family 31 TIM-barrel domain
`XP_057812181.1`	Pfam	`PF21365`	Glyco_hydro_31_3rd	Domain	640	729	9.3e-24	84.4	Glycosyl hydrolase family 31 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057956198.1
GACTTTTAACCACACCAAATAATATTGCCTTATGAAAATTAATATATATATAAATGATTAGATATTTCCTGTGTGAGTTGTCCAGTAATAGATAAGATAGTGATTCATTCCACTACTTGAAACTCACGATCCATCCATAATGGTCAAACCAAATTCCAAAGTCTTCCAATTATTGATTCTCGTCGCATTCTTCAATTGTTCAGCATTTTCAGCTGAAGCAGAAGTAGTCGGATATGGCTACCGTCTCCGATCTATAAAGG...

CDS

1 records

下载 CDS FASTA

LOC131026341
ATGGTCAAACCAAATTCCAAAGTCTTCCAATTATTGATTCTCGTCGCATTCTTCAATTGTTCAGCATTTTCAGCTGAAGCAGAAGTAGTCGGATATGGCTACCGTCTCCGATCTATAAAGGCCGATTCATCGCGAAAATCTCTCAGCTCTCTTCTTCAGCTCATCGACCACTCCTCTGTGTACGGCCCAGATCTCCCACTCCTCTCTCTCACCGCCAGCTTAGAAACAAAAGAGCGTTTGAGAGTGAGCATAACCGACTC...

Protein

1 records

下载 Protein FASTA

XP_057812181.1
MVKPNSKVFQLLILVAFFNCSAFSAEAEVVGYGYRLRSIKADSSRKSLSSLLQLIDHSSVYGPDLPLLSLTASLETKERLRVSITDSDKTRWEIPNDILPRPPRRHGGRISPPLLSDASSDLIFTLQNTTPFGFAVHRRGAAAPLFDAAPIQNQPSTYLVFKNQYLQLSSSLPPQKSNLYGIGEHTRGSFRLQPNQTLTLWNADIGSANVDVNLYGSHPFYMDVRPNGMTHGVLLLNSNAMDVVYSGDRITYKVIGGILD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器