当前解析结果
SmilChr05G002594| 统一新 Gene ID | SmilChr05G002594 |
|---|---|
| 名称 | SmilChr05G002594 |
| 描述 | uncharacterized SmilChr05G002594 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 29167972 - 29172416 / - |
| NCBI Gene ID | LOC131025769 |
|---|---|
| GeneID | 131025769 |
| locus_tag | - |
| NCBI Name | LOC131025769 |
| 原始查询 | SmilChr05G002594 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=27.3; qcov=0.699; evalue=2.36e-16; confidence=low |
| Rice | Os12g0169300- identity=24.9; qcov=0.743; evalue=6.77e-13; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF14303 (NAM-associated) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025769 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811536.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811536.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811536.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811536.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811536.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:29167973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,D7 |
Chr5:29167980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,A14,B27,B97 |
Chr5:29167994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B67 |
Chr5:29168001 |
G |
A |
EMS_canonical_SNV | stop_gained | 37 | A5,B120,B126,B132,B133,B16,B17,B21,B25,B38,B39,B48,B54,B55,B56,B65,B76,B84,B89,B92,C1,C15,C24,C31,C32,C33,C36,C38,C4,C40,C41,C43,C54,C74,C78,C87,D6 |
Chr5:29168008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B12,B26,B99,C77 |
Chr5:29168029 |
T |
TA |
1bp_insertion | frameshift_variant | 18 | A1,B106,B117,B139,B3,B32,B4,B57,B70,B71,B72,B74,C14,C38,C42,C50,C55,C58 |
Chr5:29168032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B128,B61,C43,C49 |
Chr5:29168056 |
C |
CA |
1bp_insertion | frameshift_variant | 24 | A13,A19,A8,B10,B104,B120,B128,B23,B25,B27,B42,B66,B99,C20,C38,C39,C44,C47,C5,C59,C68,D1,D4,D6 |
Chr5:29168060 |
AT |
A |
1bp_deletion | frameshift_variant | 24 | A15,A19,A22,A6,B1,B11,B123,B139,B14,B23,B32,B34,B35,B41,B56,B57,B65,B73,B92,C25,C4,C49,C7,C74 |
Chr5:29168094 |
AC |
A |
1bp_deletion | frameshift_variant | 26 | A16,A2,A8,B103,B121,B123,B137,B18,B21,B35,B36,B49,B5,B54,B55,B68,B73,B92,C11,C22,C29,C54,C75,C81,C85,D5 |
Chr5:29168118 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A11,B11,B118,B132,B36,B59,B69,C13 |
Chr5:29168126 |
A |
AG |
1bp_insertion | frameshift_variant | 19 | A7,B106,B110,B112,B16,B3,B33,B86,B88,C11,C15,C16,C2,C22,C3,C32,C36,C61,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811536.1PF14303
NAM-associated 207-335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811536.1 |
Pfam | PF14303 |
NAM-associated | Family | 207 | 335 | 2.5e-07 | 32.4 | No apical meristem-associated C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。