当前解析结果
SmilChr05G002595| 统一新 Gene ID | SmilChr05G002595 |
|---|---|
| 名称 | SmilChr05G002595 |
| 描述 | alpha-glucosidase-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 29180320 - 29184003 / + |
| NCBI Gene ID | LOC131026347 |
|---|---|
| GeneID | 131026347 |
| locus_tag | - |
| NCBI Name | LOC131026347 |
| 原始查询 | SmilChr05G002595 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha-glucosidase-like |
| 产物 | alpha-glucosidase-like |
| Arabidopsis | AT5G11720 (AT5G11720)Glycosyl hydrolases family 31 protein [Source:NCBI gene (formerly Entrezgene);Acc:831044] identity=60.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os06g0675700- identity=54.3; qcov=0.991; evalue=0; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01055 (Glyco_hydro_31_2nd); PF13802 (Gal_mutarotas_2); PF21365 (Glyco_hydro_31_3rd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026347 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057812184.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057812184.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057812184.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057812184.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057812184.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:29180396 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | B43,D3 |
Chr5:29180396 |
A |
AC |
1bp_insertion | CDS_variant | 2 | B43,D3 |
Chr5:29180397 |
T |
TTC |
2bp_insertion | frameshift_variant | 3 | C3,C44,D5 |
Chr5:29180397 |
T |
TTC |
2bp_insertion | CDS_variant | 3 | C3,C44,D5 |
Chr5:29180398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,D3 |
Chr5:29180447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:29180472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,B9 |
Chr5:29180484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr5:29180505 |
CT |
C |
1bp_deletion | frameshift_variant | 30 | A10,A14,A25,A9,B111,B123,B130,B133,B138,B36,B41,B45,B62,B71,B81,C1,C17,C27,C47,C5,C51,C53,C57,C6,C64,C65,C66,C86,D3,D5 |
Chr5:29180532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C2,C45,C46,C5 |
Chr5:29180542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr5:29181301 |
CCG |
C |
2bp_deletion | frameshift_variant | 31 | A1,A19,A6,B100,B103,B113,B14,B26,B29,B30,B5,B55,B66,B69,B72,B74,B76,B83,B90,B97,C19,C21,C32,C41,C44,C55,C71,C74,C79,C83,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812184.1PF13802
Gal_mutarotas_2 93-247 aa
PF01055
Glyco_hydro_31_2nd 290-639 aa
PF21365
Glyco_hydro_31_3rd 647-736 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812184.1 |
Pfam | PF13802 |
Gal_mutarotas_2 | Domain | 93 | 247 | 8.2e-13 | 49.7 | Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain |
XP_057812184.1 |
Pfam | PF01055 |
Glyco_hydro_31_2nd | Domain | 290 | 639 | 1.7e-123 | 412.8 | Glycosyl hydrolases family 31 TIM-barrel domain |
XP_057812184.1 |
Pfam | PF21365 |
Glyco_hydro_31_3rd | Domain | 647 | 736 | 1.2e-22 | 80.9 | Glycosyl hydrolase family 31 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。