Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002632

染色体: Chr05 坐标: 29673983-29675387 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002632
名称SmilChr05G002632
描述uncharacterized SmilChr05G002632
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向29673983 - 29675387 / +

ID 对照

NCBI Gene IDLOC131026403
GeneID131026403
locus_tag-
NCBI NameLOC131026403
原始查询SmilChr05G002632

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962]; symbol=AT4G28450; hit=AT4G28450; species=arabidopsis; confidence=low
产物WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962]; symbol=AT4G28450; hit=AT4G28450; species=arabidopsis; confidence=low
ArabidopsisAT4G28450 (AT4G28450)
WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962]
identity=80; qcov=0.443; evalue=2.78e-14; confidence=low
Rice-
-
GOGO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005515 (protein binding); GO:0005730 (nucleolus); GO:0032040 (small-subunit processome)
KEGG-
PfamPF00400 (WD40)
InterPro-
eggNOG-
NRGeneID:131026403

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057812264.1
2 Nucleus 细胞核 0.80000 XP_057812265.1
3 Chromosome 染色体 0.00000 XP_057812264.1
4 Centromere 着丝粒 0.00000 XP_057812264.1
5 Chromatin 染色质 0.00000 XP_057812264.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057812264.1
83 aa
N
1
42
83
WD40
C
PF00400 WD40 6-39 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057812264.1 Pfam PF00400 WD40 Repeat 6 39 2.5e-07 31.6 WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057956281.1
TTCGAAAAATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGTCAGAATCTTCCAATATAATAGTGGTCACAACCGAGAAATATATCATACTAAGAGAATGCAGAGGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAG...
XM_057956282.1
TTCGAAAAATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAGATTGGTTTCTGATTTATTATCAAATTTCTTCTAATCTGGAGAGAAAGAGATAGGAGAAAAAACAT...

CDS

2 records

下载 CDS FASTA
LOC131026403
ATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAGATTGGTTTCTGATTTATTATCAAATTTCTTCTAATCTGGAGAGAAAGAGATAG
LOC131026403
ATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGTCAGAATCTTCCAATATAATAGTGGTCACAACCGAGAAATATATCATACTAAGAGAATGCAGAGGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAG

Protein

2 records

下载 Protein FASTA
XP_057812264.1
MNETRCVHKDHVSAVMDIDYSPTGREFVTRSYDRTVRIFQYNSGHNREIYHTKRMQRVFCVKFRNDGTLYSTLEGQSVRATGS
XP_057812265.1
MNETRCVHKDHVSAVMDIDYSPTGREFVTRSYDRTGLLCEVQERRNFVFDFGRPKRPSNWELDWFLIYYQISSNLERKR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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