当前解析结果
SmilChr05G002638| 统一新 Gene ID | SmilChr05G002638 |
|---|---|
| 名称 | SmilChr05G002638 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At2g23950 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 29791790 - 29795595 / - |
| NCBI Gene ID | LOC131026395 |
|---|---|
| GeneID | 131026395 |
| locus_tag | - |
| NCBI Name | LOC131026395 |
| 原始查询 | SmilChr05G002638 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At2g23950 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At2g23950 |
| Arabidopsis | AT2G23950 (AT2G23950)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816928] identity=78.9; qcov=0.612; evalue=4.66e-67; confidence=high |
| Rice | Os08g0442700 (COE1)- identity=78.2; qcov=0.617; evalue=1.27e-62; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026395 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057812249.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057812255.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057812255.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057812249.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057812249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:29791921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B42,B43 |
Chr5:29791966 |
A |
AT |
1bp_insertion | frameshift_variant | 70 | A15,A18,A24,A4,A5,A7,A8,A9,B106,B107,B110,B118,B120,B123,B125,B128,B129,B13,B134,B137,B138,B14,B15,B16,B17,B2,B24,B26,B29,B37,B38,B39,B45,B47,B50,B58,B59,B63,B65,B78,B8,B82,B83,B84,B87,B90,B92,C12,C19,C22,C26,C30,C32,C33,C36,C41,C44,C56,C6,C63,C67,C68,C69,C71,C74,C8,C80,C84,C87,D6 |
Chr5:29792116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr5:29792472 |
TC |
T |
1bp_deletion | frameshift_variant | 11 | A7,B100,B111,B113,B130,B36,B81,B95,C28,C34,C56 |
Chr5:29792482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B114,B17,B25 |
Chr5:29792493 |
AC |
A |
1bp_deletion | frameshift_variant | 26 | A1,B113,B12,B14,B27,B47,B55,B77,B80,B89,B9,B94,B97,C10,C14,C17,C20,C27,C29,C33,C37,C51,C65,C74,C87,D4 |
Chr5:29792506 |
CT |
C |
1bp_deletion | frameshift_variant | 21 | A21,A23,B103,B11,B111,B123,B135,B45,B56,B60,B69,B78,B83,C16,C3,C37,C50,C59,C72,C78,D10 |
Chr5:29792580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,C14,C20 |
Chr5:29793190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B19,D9 |
Chr5:29793208 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | B115,B128,B13,B136,B139,B45,B48,B76,B87,C41,C52 |
Chr5:29793432 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B25,C59 |
Chr5:29793432 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B25,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812249.1PF07714
PK_Tyr_Ser-Thr 84-217 aa
PF00069
Pkinase 94-223 aa
XP_057812250.1PF07714
PK_Tyr_Ser-Thr 84-217 aa
PF00069
Pkinase 94-223 aa
XP_057812251.1PF07714
PK_Tyr_Ser-Thr 84-217 aa
PF00069
Pkinase 94-223 aa
XP_057812252.1PF07714
PK_Tyr_Ser-Thr 84-217 aa
PF00069
Pkinase 94-223 aa
XP_057812253.1PF07714
PK_Tyr_Ser-Thr 84-217 aa
PF00069
Pkinase 94-223 aa
XP_057812254.1PF07714
PK_Tyr_Ser-Thr 84-217 aa
PF00069
Pkinase 94-223 aa
XP_057812255.1PF07714
PK_Tyr_Ser-Thr 52-185 aa
PF00069
Pkinase 62-191 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812249.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 84 | 217 | 3.6e-19 | 69.8 | Protein tyrosine and serine/threonine kinase |
XP_057812249.1 |
Pfam | PF00069 |
Pkinase | Domain | 94 | 223 | 1.9e-20 | 74.1 | Protein kinase domain |
XP_057812250.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 84 | 217 | 3.6e-19 | 69.8 | Protein tyrosine and serine/threonine kinase |
XP_057812250.1 |
Pfam | PF00069 |
Pkinase | Domain | 94 | 223 | 1.9e-20 | 74.1 | Protein kinase domain |
XP_057812251.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 84 | 217 | 3.6e-19 | 69.8 | Protein tyrosine and serine/threonine kinase |
XP_057812251.1 |
Pfam | PF00069 |
Pkinase | Domain | 94 | 223 | 1.9e-20 | 74.1 | Protein kinase domain |
XP_057812252.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 84 | 217 | 3.6e-19 | 69.8 | Protein tyrosine and serine/threonine kinase |
XP_057812252.1 |
Pfam | PF00069 |
Pkinase | Domain | 94 | 223 | 1.9e-20 | 74.1 | Protein kinase domain |
XP_057812253.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 84 | 217 | 3.6e-19 | 69.8 | Protein tyrosine and serine/threonine kinase |
XP_057812253.1 |
Pfam | PF00069 |
Pkinase | Domain | 94 | 223 | 1.9e-20 | 74.1 | Protein kinase domain |
XP_057812254.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 84 | 217 | 3.6e-19 | 69.8 | Protein tyrosine and serine/threonine kinase |
XP_057812254.1 |
Pfam | PF00069 |
Pkinase | Domain | 94 | 223 | 1.9e-20 | 74.1 | Protein kinase domain |
XP_057812255.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 52 | 185 | 2.6e-19 | 70.3 | Protein tyrosine and serine/threonine kinase |
XP_057812255.1 |
Pfam | PF00069 |
Pkinase | Domain | 62 | 191 | 1.3e-20 | 74.6 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
17 records
下载 cDNA FASTA7 records
下载 CDS FASTA7 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。