Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002664

染色体: Chr05 坐标: 30138943-30147924 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002664
名称SmilChr05G002664
描述uncharacterized SmilChr05G002664
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向30138943 - 30147924 / -

ID 对照

NCBI Gene IDLOC131026371
GeneID131026371
locus_tag-
NCBI NameLOC131026371
原始查询SmilChr05G002664

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述portal protein [Source:NCBI gene (formerly Entrezgene);Acc:834884]; symbol=AT5G48310; hit=AT5G48310; species=arabidopsis; confidence=high
产物portal protein [Source:NCBI gene (formerly Entrezgene);Acc:834884]; symbol=AT5G48310; hit=AT5G48310; species=arabidopsis; confidence=high
ArabidopsisAT5G48310 (AT5G48310)
portal protein [Source:NCBI gene (formerly Entrezgene);Acc:834884]
identity=54.7; qcov=0.985; evalue=0; confidence=high
RiceOs02g0198400
-
identity=44.7; qcov=1.03; evalue=0; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131026371

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 0.40000 XP_057812221.1
2 Trans-golgi network Trans-golgi network 0.40000 XP_057812221.1
3 Clathrin-coated vesicle Clathrin-coated vesicle 0.20000 XP_057812221.1
4 Nucleus 细胞核 0.00000 XP_057812221.1
5 Chromosome 染色体 0.00000 XP_057812221.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:30139193 AT A 1bp_deletion frameshift_variant 2 B56,B96
Chr5:30139193 AT A 1bp_deletion CDS_variant 2 B56,B96
Chr5:30139367 G A EMS_canonical_SNV CDS_variant 1 A4
Chr5:30139647 G A EMS_canonical_SNV CDS_variant 4 C18,C29,C72,D2
Chr5:30139965 C T EMS_canonical_SNV CDS_variant 1 C85
Chr5:30140445 C T EMS_canonical_SNV CDS_variant 1 B25
Chr5:30140490 AT A 1bp_deletion frameshift_variant 1 C9
Chr5:30140490 AT A 1bp_deletion CDS_variant 1 C9
Chr5:30141331 G A EMS_canonical_SNV stop_gained 1 B57
Chr5:30141331 G A EMS_canonical_SNV CDS_variant 1 B57
Chr5:30141356 G A EMS_canonical_SNV CDS_variant 1 B112
Chr5:30141543 C T EMS_canonical_SNV CDS_variant 1 D1

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057956238.1
TCAAACTAGCCGTTGGGCTTTGTTTTGTGAACAAATCCAGCCAGCTCTCCACCGACGACGCTCTCTCACAGCCACCTCTCTCTTCTCTATATTCAAGATCTTTAGTCAGTAAGCGGAGTGCGTAACTCTTCAACATCTCCAAATCCTCTCACCTACTGAGGTGATCGTCTGTGAAGCTAAAGTACTTCTGAAATGTTCACGGAAGGGCTAGATGAAAGTGCCATTAACTGGATCAAGAAGGGATCAGATTCAGAACAGTA...

CDS

1 records

下载 CDS FASTA
LOC131026371
ATGTTCACGGAAGGGCTAGATGAAAGTGCCATTAACTGGATCAAGAAGGGATCAGATTCAGAACAGTATCCACCTCGATCACCGTTGTCTGAGAGGATAGATACAAAATATCATCTCCCTAGATCACCATTAGCATACAATTCGAGCAGTTATGCCTCCCATATTCTGCCTCCGTTGAAATTTCATTCTGGATTAGTAAAACCCCTCAGCACCGTCACTCTAAGTGTTGAAAGTAATGAGGATGAGTCCGATTATTACAA...

Protein

1 records

下载 Protein FASTA
XP_057812221.1
MFTEGLDESAINWIKKGSDSEQYPPRSPLSERIDTKYHLPRSPLAYNSSSYASHILPPLKFHSGLVKPLSTVTLSVESNEDESDYYNDDNDDECESVGSAPHGNNSDDNAVDGPVIRGFEEDMFHFSASKKLNDSKYRSTIKRGLLQEDLRVEVPGSVRRFTDGEWGSRGYGQSSGGSFRLNDRKDPNSAYGTPIGNMSENVELGTPSAPPFMDIGNAHDSEAGSEKSIDSQFKELEQGFLGDKGFAEQSNKSVKIETEV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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