当前解析结果
SmilChr05G002665| 统一新 Gene ID | SmilChr05G002665 |
|---|---|
| 名称 | SmilChr05G002665 |
| 描述 | uncharacterized SmilChr05G002665 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 30152795 - 30154029 / + |
| NCBI Gene ID | LOC131025786 |
|---|---|
| GeneID | 131025786 |
| locus_tag | - |
| NCBI Name | LOC131025786 |
| 原始查询 | SmilChr05G002665 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0523701; species=rice; confidence=low |
| 产物 | hit=Os06g0523701; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os06g0523701- identity=32.1; qcov=0.508; evalue=5.86e-19; confidence=low |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025786 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811556.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057811556.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057811556.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811556.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811556.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:30152805 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | D1 |
Chr5:30152805 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | D1 |
Chr5:30152840 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | B108,B125,B4,B42,B43,B63,C30,C34,C54,C61,C72,C73,C83,D4 |
Chr5:30152860 |
GAA |
G |
2bp_deletion | frameshift_variant | 25 | A20,A24,A3,A5,B126,B138,B19,B49,B51,B52,B54,B57,B81,B87,B90,B92,B99,C28,C41,C44,C55,C87,D1,D7,D9 |
Chr5:30152908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,A24,B26 |
Chr5:30152925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr5:30152972 |
GAT |
* |
2bp_deletion | CDS_variant | 1 | B26 |
Chr5:30153004 |
A |
AG |
1bp_insertion | frameshift_variant | 40 | A11,A2,A20,A24,A3,A4,A5,A7,B1,B102,B121,B138,B19,B32,B48,B49,B52,B54,B57,B68,B7,B77,B81,B82,B89,B9,B90,B99,C26,C28,C36,C41,C44,C60,C73,C78,C87,D6,D7,D9 |
Chr5:30153012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr5:30153022 |
AAG |
A |
2bp_deletion | frameshift_variant | 3 | A10,A24,B26 |
Chr5:30153022 |
AAG |
A |
2bp_deletion | CDS_variant | 3 | A10,A24,B26 |
Chr5:30153023 |
AG |
A |
1bp_deletion | frameshift_variant | 159 | A1,A13,A16,A18,A2,A20,A21,A23,A3,A7,A8,A9,B100,B104,B107,B109,B11,B111,B113,B114,B115,B118,B119,B120,B121,B122,B124,B125,B126,B127,B128,B13,B130,B131,B133,B134,B135,B136,B137,B139,B14,B140,B16,B17,B2,B20,B22,B23,B24,B25,B27,B28,B3,B31,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B45,B47,B49,B50,B53,B55,B56,B57,B59,B6,B60,B61,B63,B65,B66,B67,B69,B70,B72,B73,B77,B78,B79,B8,B80,B83,B84,B86,B88,B90,B92,B93,B95,B96,B97,C10,C11,C12,C13,C14,C15,C17,C19,C20,C21,C22,C23,C24,C25,C27,C29,C3,C30,C32,C35,C38,C39,C4,C42,C43,C45,C47,C48,C49,C5,C50,C52,C53,C54,C56,C58,C59,C62,C68,C69,C7,C70,C71,C72,C73,C74,C75,C77,C79,C84,C85,C86,D1,D10,D2,D3,D4,D6,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。