当前解析结果
SmilChr05G002670| 统一新 Gene ID | SmilChr05G002670 |
|---|---|
| 名称 | SmilChr05G002670 |
| 描述 | persulfide dioxygenase ETHE1 homolog, mitochondrial-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 30184577 - 30188650 / - |
| NCBI Gene ID | LOC131026393 |
|---|---|
| GeneID | 131026393 |
| locus_tag | - |
| NCBI Name | LOC131026393 |
| 原始查询 | SmilChr05G002670 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | persulfide dioxygenase ETHE1 homolog, mitochondrial-like |
| 产物 | persulfide dioxygenase ETHE1 homolog%2C mitochondrial-like |
| Arabidopsis | AT1G53580 (GLY3)glyoxalase II 3 [Source:NCBI gene (formerly Entrezgene);Acc:841793] identity=83.5; qcov=0.826; evalue=6.34e-157; confidence=high |
| Rice | Os01g0667200 (GLYII-1)- identity=78.5; qcov=0.84; evalue=2.39e-150; confidence=high |
| GO | GO:0006749 (glutathione metabolic process); GO:0050313 (sulfur dioxygenase activity); GO:0070813 (hydrogen sulfide metabolic process) |
| KEGG | smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00753 (Lactamase_B) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026393 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057812246.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057812246.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812246.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812246.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812246.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:30184798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr5:30184833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,C2,D11 |
Chr5:30186010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,B121,C29 |
Chr5:30186020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C36,C60 |
Chr5:30186026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr5:30186649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B33 |
Chr5:30186651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,C2 |
Chr5:30186680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,C2 |
Chr5:30186971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C2 |
Chr5:30187044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B122 |
Chr5:30187058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C2 |
Chr5:30187068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812246.1PF00753
Lactamase_B 62-230 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812246.1 |
Pfam | PF00753 |
Lactamase_B | Domain | 62 | 230 | 1.7e-14 | 54.9 | Metallo-beta-lactamase superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。