当前解析结果
SmilChr05G002676| 统一新 Gene ID | SmilChr05G002676 |
|---|---|
| 名称 | SmilChr05G002676 |
| 描述 | C2 domain-containing protein At1g53590-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 30236395 - 30243411 / + |
| NCBI Gene ID | LOC131026417 |
|---|---|
| GeneID | 131026417 |
| locus_tag | - |
| NCBI Name | LOC131026417 |
| 原始查询 | SmilChr05G002676 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | C2 domain-containing protein At1g53590-like |
| 产物 | C2 domain-containing protein At1g53590-like |
| Arabidopsis | AT1G53590 (NTMC2T6.1)Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841794] identity=53.6; qcov=0.995; evalue=0; confidence=high |
| Rice | Os02g0313700 (OsNTMC2T6.2)- identity=47.3; qcov=0.89; evalue=0; confidence=high |
| GO | GO:0008289 (lipid binding) |
| KEGG | - |
| Pfam | PF00168 (C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026417 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057812267.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057812267.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057812267.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057812267.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057812267.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:30236971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,B94 |
Chr5:30237003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,B33 |
Chr5:30237200 |
G |
GGC |
2bp_insertion | frameshift_variant | 3 | C33,C6,C61 |
Chr5:30237200 |
G |
GGC |
2bp_insertion | CDS_variant | 3 | C33,C6,C61 |
Chr5:30237787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,D4 |
Chr5:30238077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr5:30238248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:30238435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr5:30238476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr5:30238558 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | A8,B111,B140,B2,B35,B50,C1,C29,C30,C40,C49,C50 |
Chr5:30238941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr5:30240293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812267.1PF00168
C2 289-387 aa
XP_057812268.1PF00168
C2 289-387 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812267.1 |
Pfam | PF00168 |
C2 | Domain | 289 | 387 | 4.4e-21 | 75.8 | C2 domain |
XP_057812268.1 |
Pfam | PF00168 |
C2 | Domain | 289 | 387 | 4.5e-21 | 75.8 | C2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。