当前解析结果
SmilChr05G002679| 统一新 Gene ID | SmilChr05G002679 |
|---|---|
| 名称 | SmilChr05G002679 |
| 描述 | putative callose synthase 8 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 30257954 - 30271424 / - |
| NCBI Gene ID | LOC131026420 |
|---|---|
| GeneID | 131026420 |
| locus_tag | - |
| NCBI Name | LOC131026420 |
| 原始查询 | SmilChr05G002679 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative callose synthase 8 |
| 产物 | putative callose synthase 8 |
| Arabidopsis | AT3G14570 (GSL04)glucan synthase-like 4 [Source:NCBI gene (formerly Entrezgene);Acc:820683] identity=68.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0182300 (GSL5)- identity=51.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0000148 (1,3-beta-D-glucan synthase complex); GO:0003843 (1,3-beta-D-glucan synthase activity); GO:0005886 (plasma membrane); GO:0006075 ((1->3)-beta-D-glucan biosynthetic process) |
| KEGG | - |
| Pfam | PF02364 (Glucan_synthase); PF04652 (Vta1); PF14288 (FKS1_dom1); PF25968 (CALS1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026420 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057812271.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057812271.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812271.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812271.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812271.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:30258770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,D1 |
Chr5:30258926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,B94,D3 |
Chr5:30259019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr5:30259196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr5:30259222 |
AG |
A |
1bp_deletion | frameshift_variant | 14 | A2,A9,B101,B33,B41,B53,B69,B88,C24,C35,C4,C75,D10,D8 |
Chr5:30259229 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr5:30259236 |
A |
AAT |
2bp_insertion | frameshift_variant | 6 | A9,B33,B53,B69,B88,D8 |
Chr5:30259239 |
TTG |
T |
2bp_deletion | frameshift_variant | 4 | A9,B53,B88,D8 |
Chr5:30259239 |
TTG |
T |
2bp_deletion | CDS_variant | 4 | A9,B53,B88,D8 |
Chr5:30259248 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | A9,B53,B88,D8 |
Chr5:30259248 |
GT |
G |
1bp_deletion | CDS_variant | 4 | A9,B53,B88,D8 |
Chr5:30259253 |
T |
TC |
1bp_insertion | frameshift_variant | 4 | A9,B53,B88,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812271.1PF04652
Vta1 60-177 aa
PF14288
FKS1_dom1 330-441 aa
PF25968
CALS1 884-1074 aa
PF02364
Glucan_synthase 1080-1172 aa
PF02364
Glucan_synthase 1173-1768 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812271.1 |
Pfam | PF04652 |
Vta1 | Family | 60 | 177 | 2e-08 | 35.1 | Vta1 like |
XP_057812271.1 |
Pfam | PF14288 |
FKS1_dom1 | Family | 330 | 441 | 7.4e-42 | 142.9 | 1,3-beta-glucan synthase subunit FKS1, domain-1 |
XP_057812271.1 |
Pfam | PF25968 |
CALS1 | Domain | 884 | 1074 | 1.6e-44 | 152.5 | Callose synthase 1 domain |
XP_057812271.1 |
Pfam | PF02364 |
Glucan_synthase | Family | 1080 | 1172 | 1.8e-222 | 741.7 | 1,3-beta-glucan synthase component |
XP_057812271.1 |
Pfam | PF02364 |
Glucan_synthase | Family | 1173 | 1768 | 1.8e-222 | 741.7 | 1,3-beta-glucan synthase component |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。