当前解析结果
SmilChr05G002680| 统一新 Gene ID | SmilChr05G002680 |
|---|---|
| 名称 | SmilChr05G002680 |
| 描述 | transcription factor AS1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 30287798 - 30290452 / + |
| NCBI Gene ID | LOC131025789 |
|---|---|
| GeneID | 131025789 |
| locus_tag | - |
| NCBI Name | LOC131025789 |
| 原始查询 | SmilChr05G002680 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor AS1-like |
| 产物 | transcription factor AS1-like |
| Arabidopsis | AT2G37630 (AS1)myb-like HTH transcriptional regulator family protein [Source:NCBI gene (formerly Entrezgene);Acc:818340] identity=75.3; qcov=0.63; evalue=4.74e-43; confidence=medium |
| Rice | Os12g0572000 (OsMYB91)- identity=62.1; qcov=0.753; evalue=3.28e-35; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025789 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811559.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811559.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811559.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811559.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811559.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:30290014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B25,B88,D11,D3 |
Chr5:30290022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr5:30290037 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr5:30290037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:30290054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C8,C82 |
Chr5:30290099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B91,C85 |
Chr5:30290113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B11,B55,B89 |
Chr5:30290132 |
C |
T |
EMS_canonical_SNV | stop_gained | 50 | A1,A10,A15,A19,A20,A5,B104,B105,B11,B114,B12,B122,B131,B138,B14,B25,B27,B32,B38,B39,B45,B46,B48,B51,B55,B58,B65,B67,B77,B78,B86,B87,B88,B89,B91,B97,C21,C29,C4,C46,C48,C50,C60,C70,C77,C8,C87,D10,D11,D3 |
Chr5:30290148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B11,B55,B89 |
Chr5:30290158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:30290160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B91,C8 |
Chr5:30290161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B58,B97,C50 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。