Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002690`

染色体: Chr05 坐标: 30622490-30627947 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002690`
名称	SmilChr05G002690
描述	tyrosine--tRNA ligase 1, cytoplasmic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	30622490 - 30627947 / `+`

ID 对照

NCBI Gene ID	`LOC131026428`
GeneID	`131026428`
locus_tag	`-`
NCBI Name	`LOC131026428`
原始查询	`SmilChr05G002690`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tyrosine--tRNA ligase 1, cytoplasmic-like
产物	tyrosine--tRNA ligase 1%2C cytoplasmic-like
Arabidopsis	`AT2G33840` (AT2G33840) Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial [Source:NCBI gene (formerly Entrezgene);Acc:817952] identity=78.2; qcov=0.918; evalue=0; confidence=high
Rice	`Os08g0150800` (P0443G08.126) - identity=75.9; qcov=0.918; evalue=0; confidence=high
GO	GO:0004831 (tyrosine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0006418 (tRNA aminoacylation for protein translation)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00579 (tRNA-synt_1b)
InterPro	-
eggNOG	-
NR	GeneID:131026428

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057812276.1`
2	Cytoplasm	细胞质	0.80000	`XP_057812276.1`
3	Nucleus	细胞核	0.40000	`XP_057812276.1`
4	Nucleoplasm	核质	0.20000	`XP_057812276.1`
5	Chromosome	染色体	0.00000	`XP_057812276.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:30623123`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B139,B2,B31,B64
`Chr5:30623143`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B76
`Chr5:30623143`	`CA`	`C`	1bp_deletion	CDS_variant	1	B76
`Chr5:30623151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:30623179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr5:30623194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C33,C78
`Chr5:30623417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr5:30623476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr5:30624236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr5:30625528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B45,C49,C51,C70,C9
`Chr5:30625572`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	49	A2,A5,B112,B117,B118,B126,B128,B129,B13,B131,B135,B22,B24,B26,B33,B37,B4,B43,B45,B51,B60,B67,B79,B80,B81,B82,B86,B93,B97,B98,C1,C20,C32,C35,C49,C51,C58,C59,C6,C63,C70,C72,C75,C77,C8,C80,C84,C9,D3
`Chr5:30625740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812276.1

382 aa

191

382

tRNA-synt_1b

PF00579 tRNA-synt_1b 60-354 aa

XP_057812277.1

382 aa

191

382

tRNA-synt_1b

PF00579 tRNA-synt_1b 60-354 aa

XP_057812278.1

380 aa

190

380

tRNA-synt_1b

PF00579 tRNA-synt_1b 60-354 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812276.1`	Pfam	`PF00579`	tRNA-synt_1b	Family	60	354	1.9e-61	208.7	tRNA synthetases class I (W and Y)
`XP_057812277.1`	Pfam	`PF00579`	tRNA-synt_1b	Family	60	354	1.9e-61	208.7	tRNA synthetases class I (W and Y)
`XP_057812278.1`	Pfam	`PF00579`	tRNA-synt_1b	Family	60	354	1.8e-61	208.7	tRNA synthetases class I (W and Y)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057956293.1
CTTGATGGTCATGTACTGCAGTCCATAAAAGACTCCTGCAATCCAAAAGCACACTAAAAAAGCATCAAAACACAACATATTTAATATTTTTATTATGAATTTGCTTGCTTTCCACTACTGATTGTGTCATACATCTCGATTAGCATTTAGCAAAACCAAATTTGTATCCCAAATTACCGAACGAAGAGGATCCTCTGTTGCGCGCTTTAGCACAACATCATCTGTTGTGTGATTTTTCAGGACCCCTACCATTCGGAATT...

XM_057956295.1
CTTGATGGTCATGTACTGCAGTCCATAAAAGACTCCTGCAATCCAAAAGCACACTAAAAAAGCATCAAAACACAACATATTTAATATTTTTATTATGAATTTGCTTGCTTTCCACTACTGATTGTGTCATACATCTCGATTAGCATTTAGCAAAACCAAATTTGTATCCCAAATTACCGAACGAAGAGGATCCTCTGTTGCGCGCTTTAGCACAACATCATCTGTTGTGTGATTTTTCAGGACCCCTACCATTCGGAATT...

CDS

3 records

下载 CDS FASTA

LOC131026428
ATGGAGAACGAAGGAAGTAGCGGCAACAGCACTGAAGCCTCTCCATCTCAACCGCTACAGTCTCTCTCCATTTCGCCTCAACCGCAGTTGAGTTTGAAGGAGAGGTTCGATTTAATAAGGAGCATCGGCGAGGAGTGCATACAGGAGGATGAATTGGAGAGATTATTGGCGAACAAGCCTCAGATTGTCTGCTATGATGGATTTGAACCATCGGGCAGAATGCATATTGCTCAGGGAGTTATGAAGGCAATTAATGTCAA...

Protein

3 records

下载 Protein FASTA

XP_057812276.1
MENEGSSGNSTEASPSQPLQSLSISPQPQLSLKERFDLIRSIGEECIQEDELERLLANKPQIVCYDGFEPSGRMHIAQGVMKAINVNKLTSAGCIVKIWIADWFAQLNNKMGGDLKKIQVIGQYLIEIWKAVGMNIQGGQVEFLWSSDEINSRAHEYWPLVMDIARRNKLPRVLRCCQIMGRSEQDELSAAQIFYPCMQCADIFFLKADICQLGMDQRKVNMLAREYCDDIKRKNKPIILSHHMLPGLQEGQEKMSKSDP...

XP_057812277.1
MENEGSSGNSTEASPSQPLQSLSISPQPQLSLKERFDLIRSIGEECIQEDELERLLANKPQIVCYDGFEPSGRMHIAQGVMKAINVNKLTSAGCIVKIWIADWFAQLNNKMGGDLKKIQVIGQYLIEIWKAVGMNIQGGQVEFLWSSDEINSRAHEYWPLVMDIARRNKLPRVLRCCQIMGRSEQDELSAAQIFYPCMQCADIFFLKADICQLGMDQRKVNMLAREYCDDIKRKNKPIILSHHMLPGLQEGQEKMSKSDP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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