Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002693

染色体: Chr05 坐标: 30645278-30647901 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002693
名称SmilChr05G002693
描述interactor of constitutive active ROPs 1-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向30645278 - 30647901 / -

ID 对照

NCBI Gene IDLOC131026431
GeneID131026431
locus_tag-
NCBI NameLOC131026431
原始查询SmilChr05G002693

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述interactor of constitutive active ROPs 1-like
产物interactor of constitutive active ROPs 1-like
ArabidopsisAT1G78430 (RIP4)
ROP interactive partner 2 [Source:NCBI gene (formerly Entrezgene);Acc:844179]
identity=44.8; qcov=1.01; evalue=1.43e-74; confidence=medium
RiceOs01g0757600
-
identity=44.5; qcov=0.287; evalue=3.47e-16; confidence=weak
GO-
KEGG-
PfamPF27682 (ICR5_C)
InterPro-
eggNOG-
NRGeneID:131026431

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057812280.1
2 Cytoskeleton 细胞骨架 0.80000 XP_057812280.1
3 Cytosol 细胞质基质 0.40000 XP_057812280.1
4 Nucleus 细胞核 0.00000 XP_057812280.1
5 Chromosome 染色体 0.00000 XP_057812280.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:30645665 C T EMS_canonical_SNV CDS_variant 1 D1
Chr5:30645767 G A EMS_canonical_SNV CDS_variant 1 D11
Chr5:30645778 C T EMS_canonical_SNV CDS_variant 1 B108
Chr5:30645790 C T EMS_canonical_SNV CDS_variant 1 C82
Chr5:30646104 G A EMS_canonical_SNV CDS_variant 1 C82
Chr5:30646226 C T EMS_canonical_SNV CDS_variant 1 B33
Chr5:30646238 G A EMS_canonical_SNV CDS_variant 2 C52,C84
Chr5:30646560 C T EMS_canonical_SNV CDS_variant 1 B134

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057812280.1
384 aa
N
1
192
384
ICR5_C
C
PF27682 ICR5_C 212-310 aa
XP_057812281.1
384 aa
N
1
192
384
ICR5_C
C
PF27682 ICR5_C 212-310 aa
XP_057812284.1
383 aa
N
1
192
383
ICR5_C
C
PF27682 ICR5_C 211-309 aa
XP_057812285.1
383 aa
N
1
192
383
ICR5_C
C
PF27682 ICR5_C 211-309 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057812280.1 Pfam PF27682 ICR5_C Domain 212 310 1e-10 43.1 Interactor of constitutive active ROPs 5 C-terminal domain
XP_057812281.1 Pfam PF27682 ICR5_C Domain 212 310 1e-10 43.1 Interactor of constitutive active ROPs 5 C-terminal domain
XP_057812284.1 Pfam PF27682 ICR5_C Domain 211 309 1e-10 43.1 Interactor of constitutive active ROPs 5 C-terminal domain
XP_057812285.1 Pfam PF27682 ICR5_C Domain 211 309 1e-10 43.1 Interactor of constitutive active ROPs 5 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057956297.1
AAATTTTATTTCGACATATTTAATTCGAACTTTCAAACTTCCAACCCCTCTCTCTCTCTCTCCCCCTTTTCTATCGTCCCGTCTCGTGTCCCAATAAGAGCTGTCACACACACACACACACAGGGTAGTGCACAATTACCCTCATAAATGCCGCACAACGGTTTCAAATTTAATGCCGCTTTCTTTGTATTTCTAAGGTCGTCTGCTGCAAATAACCATTGTGCTCTGCTGTTTCTGCTCTATAACAATGCGCTCCTGAC...
XM_057956302.1
GAACTTTCAAACTTCCAACCCCTCTCTCTCTCTCTCCCCCTTTTCTATCGTCCCGTCTCGTGTCCCAATAAGAGCTGTCACACACACACACACACAGGGTAGTGCACAATTACCCTCATAAATGCCGCACAACGGTTTCAAATTTAATGCCGCTTTCTTTGTATTTCTAAGGTCGTCTGCTGCAAATAACCATTGTGCTCTGCTGTTTCTGCTCTATAACAATGCGCTCCTGACCACAACTTGAAGAAGAAGAAGAAGAA...

CDS

4 records

下载 CDS FASTA
LOC131026431
ATGCCAAGAACAAGAGTAACAGAAGTAGCTCTACGGCCATCTCCTCGAGGGCCTCCTAATCTGAGGACGTCCAGCGCTGATTCTGATCCATCACATATTCGTCCCAGGACGGAGAGGAGCCCAAAAGTAGCCGATGGTCGGTCACAGAGAGGGTCCCAGTCCAACCCATTGAATCAGAAGAAACTAGGAACTCGCATTGCAGATTTGGAATCTCAACTTGGCCTTGCACAGGAGGAGCTCAAGAGTCTGAAGGGTCAGAT...
LOC131026431
ATGCCAAGAACAAGAGTAACAGAAGTAGCTCTACGGCCATCTCCTCGAGGGCCTCCTAATCTGAGGACGTCCAGCGCTGATTCTGATCCATCACATATTCGTCCCAGGACGGAGAGGAGCCCAAAAGTAGCCGATGGTCGGTCACAGAGAGGGTCCCAGTCCAACCCATTGAATCAGAAGAAACTAGGAACTCGCATTGCAGATTTGGAATCTCAACTTGGCCTTGCACAGGAGGAGCTCAAGAGTCTGAAGGGTCAGAT...

Protein

4 records

下载 Protein FASTA
XP_057812280.1
MPRTSRVTEVALRPSPRGPPNLRTSSADSDPSHIRPRTERSPKVADGRSQRGSQSNPLNQKKLGTRIADLESQLGLAQEELKSLKGQIVSTETAKKAAQDQLDKKPKKPQKAPEPLEIVEKHSTPAEARKLSKKDSTSMYEATDEIQEETDVYEVPNEKKTVEPKAEPELPAEDDELKHNSISLSVESPATIEPENPLVDELASKNEQINLLKAHLDEKEKELDESRQENENLKSQLEEKSLKISSAQSEIDELNQRLTL...
XP_057812281.1
MPRTSRVTEVALRPSPRGPPNLRTSSADSDPSHIRPRTERSPKVADGRSQRGSQSNPLNQKKLGTRIADLESQLGLAQEELKSLKGQIVSTETAKKAAQDQLDKKPKKPQKAPEPLEIVEKHSTPAEARKLSKKDSTSMYEATDEIQEETDVYEVPNEKKTVEPKAEPELPAEDDELKHNSISLSVESPATIEPENPLVDELASKNEQINLLKAHLDEKEKELDESRQENENLKSQLEEKSLKISSAQSEIDELNQRLTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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