当前解析结果
SmilChr05G002693| 统一新 Gene ID | SmilChr05G002693 |
|---|---|
| 名称 | SmilChr05G002693 |
| 描述 | interactor of constitutive active ROPs 1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 30645278 - 30647901 / - |
| NCBI Gene ID | LOC131026431 |
|---|---|
| GeneID | 131026431 |
| locus_tag | - |
| NCBI Name | LOC131026431 |
| 原始查询 | SmilChr05G002693 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | interactor of constitutive active ROPs 1-like |
| 产物 | interactor of constitutive active ROPs 1-like |
| Arabidopsis | AT1G78430 (RIP4)ROP interactive partner 2 [Source:NCBI gene (formerly Entrezgene);Acc:844179] identity=44.8; qcov=1.01; evalue=1.43e-74; confidence=medium |
| Rice | Os01g0757600- identity=44.5; qcov=0.287; evalue=3.47e-16; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF27682 (ICR5_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026431 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057812280.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.80000 | XP_057812280.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057812280.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812280.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812280.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:30645665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr5:30645767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:30645778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:30645790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:30646104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:30646226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:30646238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,C84 |
Chr5:30646560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812280.1PF27682
ICR5_C 212-310 aa
XP_057812281.1PF27682
ICR5_C 212-310 aa
XP_057812284.1PF27682
ICR5_C 211-309 aa
XP_057812285.1PF27682
ICR5_C 211-309 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812280.1 |
Pfam | PF27682 |
ICR5_C | Domain | 212 | 310 | 1e-10 | 43.1 | Interactor of constitutive active ROPs 5 C-terminal domain |
XP_057812281.1 |
Pfam | PF27682 |
ICR5_C | Domain | 212 | 310 | 1e-10 | 43.1 | Interactor of constitutive active ROPs 5 C-terminal domain |
XP_057812284.1 |
Pfam | PF27682 |
ICR5_C | Domain | 211 | 309 | 1e-10 | 43.1 | Interactor of constitutive active ROPs 5 C-terminal domain |
XP_057812285.1 |
Pfam | PF27682 |
ICR5_C | Domain | 211 | 309 | 1e-10 | 43.1 | Interactor of constitutive active ROPs 5 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。