当前解析结果
SmilChr05G002710| 统一新 Gene ID | SmilChr05G002710 |
|---|---|
| 名称 | SmilChr05G002710 |
| 描述 | uncharacterized SmilChr05G002710 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 31210663 - 31211370 / - |
| NCBI Gene ID | LOC131025796 |
|---|---|
| GeneID | 131025796 |
| locus_tag | - |
| NCBI Name | LOC131025796 |
| 原始查询 | SmilChr05G002710 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=28.8; qcov=0.591; evalue=6.2e-17; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025796 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811567.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057811567.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057811567.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057811567.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057811567.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:31210666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B48,C23 |
Chr5:31210668 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A14,B102,B120,B64,B81,C1,C11,C45,C53,C69 |
Chr5:31210677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B131,C48,C58 |
Chr5:31210678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr5:31210692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B75,C68 |
Chr5:31210700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr5:31210703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr5:31210707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr5:31210728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr5:31210734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr5:31210735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr5:31210843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。