Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002722`

染色体: Chr05 坐标: 31326104-31327194 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002722`
名称	SmilChr05G002722
描述	uncharacterized SmilChr05G002722
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	31326104 - 31327194 / `-`

ID 对照

NCBI Gene ID	`LOC131025800`
GeneID	`131025800`
locus_tag	`-`
NCBI Name	`LOC131025800`
原始查询	`SmilChr05G002722`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low
产物	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low
Arabidopsis	`AT1G66235` (AT1G66235) no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=30.9; qcov=0.987; evalue=1.78e-39; confidence=low
Rice	`Os06g0635500` - identity=22.4; qcov=0.623; evalue=4.98e-06; confidence=weak
GO	-
KEGG	-
Pfam	PF14303 (NAM-associated)
InterPro	-
eggNOG	-
NR	GeneID:131025800

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811572.1`
2	Chromosome	染色体	0.00000	`XP_057811572.1`
3	Centromere	着丝粒	0.00000	`XP_057811572.1`
4	Chromatin	染色质	0.00000	`XP_057811572.1`
5	Telomere	端粒	0.00000	`XP_057811572.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:31326104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C24,C8
`Chr5:31326115`	`CA`	`C`	1bp_deletion	frameshift_variant	10	B109,B32,B35,B62,B99,C42,C62,C70,C8,D9
`Chr5:31326123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,C24,C52,C8
`Chr5:31326129`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr5:31326132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr5:31326142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B21,C30,D6
`Chr5:31326143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B18,B23,B57,C63
`Chr5:31326147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr5:31326156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,B59,C48
`Chr5:31326171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:31326187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr5:31326203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811572.1

308 aa

154

308

NAM-associated

PF14303 NAM-associated 85-260 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811572.1`	Pfam	`PF14303`	NAM-associated	Family	85	260	1.6e-16	62.3	No apical meristem-associated C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955589.1
ATGGCTTCTTCTCGACAGCCTAATTACACAATTGATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACGGGAATACACCAAAGAAAAGAAAATTTTTGGGATCGTGTTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCAGTTCACTCTTGCAAAAGAATTGATGATGCTAGACACAAAATATAAGAAAGGCTT...

CDS

1 records

下载 CDS FASTA

LOC131025800
ATGGCTTCTTCTCGACAGCCTAATTACACAATTGATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACGGGAATACACCAAAGAAAAGAAAATTTTTGGGATCGTGTTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCAGTTCACTCTTGCAAAAGAATTGATGATGCTAGACACAAAATATAAGAAAGGCTT...

Protein

1 records

下载 Protein FASTA

XP_057811572.1
MASSRQPNYTIDEDKHLCRVYLEISQDSETGIHQRKENFWDRVREVYNEEKPNPNMYTRSSRSLETRMQFTLAKELMMLDTKYKKGFKFEHVWSIMKDYQKFDCPSQNSRQQMSASQSDSLPQSPISPDGLSNFSINLSDGSGSGSGSSHRPDGVKKTKNKRKKGEDMSNFLKVIEEGNKRIGDLMKNSSTTKEQILQLQMQKIEAKNKATEAKNKATEAKKQAIAFQMWESDNKILMMDTDNISDPVRRDYFKREQAKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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