Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002839

染色体: Chr05 坐标: 33722339-33727669 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002839
名称SmilChr05G002839
描述uncharacterized SmilChr05G002839
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向33722339 - 33727669 / +

ID 对照

NCBI Gene IDLOC130986909
GeneID130986909
locus_tag-
NCBI NameLOC130986909
原始查询SmilChr05G002839

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817669]; symbol=AT2G31130; hit=AT2G31130; species=arabidopsis; confidence=weak
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817669]; symbol=AT2G31130; hit=AT2G31130; species=arabidopsis; confidence=weak
ArabidopsisAT2G31130 (AT2G31130)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817669]
identity=50; qcov=0.127; evalue=6e-14; confidence=weak
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130986909

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 0.60000 XP_057766435.1
2 Cytoplasm 细胞质 0.20000 XP_057766435.1
3 Cytosol 细胞质基质 0.20000 XP_057766435.1
4 Trans-golgi network Trans-golgi network 0.20000 XP_057766435.1
5 Nucleus 细胞核 0.00000 XP_057766435.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:33723709 G A EMS_canonical_SNV CDS_variant 1 C2
Chr5:33724384 C T EMS_canonical_SNV CDS_variant 3 B104,B112,B9
Chr5:33724485 C T EMS_canonical_SNV CDS_variant 4 B42,B43,B56,B96
Chr5:33724895 G A EMS_canonical_SNV CDS_variant 4 C18,C29,C72,D2
Chr5:33724954 C T EMS_canonical_SNV CDS_variant 1 B15
Chr5:33724983 C T EMS_canonical_SNV CDS_variant 1 C22
Chr5:33725025 C T EMS_canonical_SNV CDS_variant 1 A6
Chr5:33725062 C T EMS_canonical_SNV CDS_variant 1 B30
Chr5:33725470 C T EMS_canonical_SNV CDS_variant 3 B13,C2,C71
Chr5:33726428 C T EMS_canonical_SNV CDS_variant 3 A11,A3,B33
Chr5:33726575 G A EMS_canonical_SNV CDS_variant 5 B106,B129,B139,C17,C36

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057910455.1
GAAACAAATCCTTTTCCATATAAAAAACCAATCTTTTTCCTCAACTCTAAATGCCGTCTATATCACAATTCACACCAATTATATTATTACAAATATAATCTCGTCATAACAAGTTCCGAAATCCCGTGAATTTCACTAAAAAATCATATCAAATTCCACTACATTAAAACCAGATCAGTAGCAACAGGTCGGCATAGAGTCGAGGGTTTTTCAAAGATTAAAACTTGGCACGTGCACGTGCAACAATAAAACCTCTGTTA...
XM_057910457.1
ATCCTTTTCCATATAAAAAACCAATCTTTTTCCTCAACTCTAAATGCCGTCTATATCACAATTCACACCAATTATATTATTACAAATATAATCTCGTCATAACAAGTTCCGAAATCCCGTGAATTTCACTAAAAAATCATATCAAATTCCACTACATTAAAACCAGATCAGTAGCAACAGGTCGGCATAGAGTCGAGGGTTTTTCAAAGATTAAAACTTGGCACGTGCACGTGCAACAATAAAACCTCTGTTAAAACGCA...

CDS

9 records

下载 CDS FASTA
LOC130986909
ATGGATTTCAACTTCAAAAATAAATTATGGGCTGGGAACATTTACCACCAGTTCGAGTCCATTTGCAAGGATGTTGATGGATTTGTAAACAAGGATACTGTGAAATTTGTTGGGAACCAGGTGCAAAGTGTCGGTTTATCTGTCAAAAGGCTTTACTCTGATGTAGTGCAAGATATACTCCCACTCTCTGGGGACACTGCAAAGCCTGAACAACAATTGGCAGCTGGTGAAAAAGTTGACATGCAGGATCACGTGTCAAT...
LOC130986909
ATGGATTTCAACTTCAAAAATAAATTATGGGCTGGGAACATTTACCACCAGTTCGAGTCCATTTGCAAGGATGTTGATGGATTTGTAAACAAGGATACTGTGAAATTTGTTGGGAACCAGGTGCAAAGTGTCGGTTTATCTGTCAAAAGGCTTTACTCTGATGTAGTGCAAGATATACTCCCACTCTCTGGGGACACTGCAAAGCCTGAACAACAATTGGCAGCTGGTGAAAAAGTTGACATGCAGGATCACGTGTCAAT...

Protein

9 records

下载 Protein FASTA
XP_057766435.1
MDFNFKNKLWAGNIYHQFESICKDVDGFVNKDTVKFVGNQVQSVGLSVKRLYSDVVQDILPLSGDTAKPEQQLAAGEKVDMQDHVSITGTGATSTSADEMQLAKNQVSNDHKVRISKPADVTEAQTCQYLTEQGDVMVQNREESISAEMNVTKDLKPVTVNSSYDSEFFSGKSYEDISSSPAFSAHEEGSTSIEEEIRDFNQQKEDEGFSDDTMHLSDTSSTAWLSKSTLVEDPYLDVNGSLSSPPVPVSIHKVDQDNCP...
XP_057766436.1
MDFNFKNKLWAGNIYHQFESICKDVDGFVNKDTVKFVGNQVQSVGLSVKRLYSDVVQDILPLSGDTAKPEQQLAAGEKVDMQDHVSITGTGATSTSADEMQLAKNQVSNDHKVRISKPADVTEAQTCQYLTEQGDVMVQNREESISAEMNVTKDLKPVTVNSSYDSEFFSGKSYEDISSSPAFSAHEEGSTSIEEEIRDFNQQKEDEGFSDDTMHLSDTSSTAWLSKSTLVEDPYLDVNGSLSSPPVPVSIHKVDQDNCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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