当前解析结果
SmilChr05G002853| 统一新 Gene ID | SmilChr05G002853 |
|---|---|
| 名称 | SmilChr05G002853 |
| 描述 | sodium/calcium exchanger NCL-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 34024537 - 34031522 / - |
| NCBI Gene ID | LOC130986908 |
|---|---|
| GeneID | 130986908 |
| locus_tag | - |
| NCBI Name | LOC130986908 |
| 原始查询 | SmilChr05G002853 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sodium/calcium exchanger NCL-like |
| 产物 | sodium/calcium exchanger NCL-like |
| Arabidopsis | AT1G53210 (AT1G53210)sodium/calcium exchanger family protein / calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:841755] identity=66.8; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0212400 (OsEFCAX1)sodium/calcium exchanger NCL1-like [Source:NCBI gene (formerly Entrezgene);Acc:4325568] identity=62.3; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0005509 (calcium ion binding); GO:0006874 (intracellular calcium ion homeostasis); GO:0015369 (calcium:proton antiporter activity); GO:0016020 (membrane); GO:0070588 (calcium ion transmembrane transport) |
| KEGG | - |
| Pfam | PF01699 (Na_Ca_ex); PF13499 (EF-hand_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986908 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057766434.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057766434.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057766434.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766434.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766434.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:34024884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:34024947 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | A5,B101,B20,B40,B48,B7,B98,C60,C61,C80 |
Chr5:34025146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C47 |
Chr5:34025643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr5:34028236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B29,B54,C64,C66 |
Chr5:34028661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B127,B29,B54 |
Chr5:34028668 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,C4 |
Chr5:34028759 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B4 |
Chr5:34028759 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B4 |
Chr5:34028761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr5:34028806 |
TC |
T |
1bp_deletion | frameshift_variant | 51 | A10,A14,A15,A7,B105,B109,B111,B114,B117,B123,B127,B132,B133,B137,B138,B28,B34,B36,B46,B50,B60,B66,B71,B72,B73,B76,B78,B79,B81,B88,B99,C1,C14,C15,C17,C22,C23,C27,C30,C34,C39,C41,C49,C53,C57,C64,C66,C70,C86,C87,C9 |
Chr5:34031019 |
A |
AAG |
2bp_insertion | frameshift_variant | 2 | B117,B46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766434.1PF01699
Na_Ca_ex 68-245 aa
PF13499
EF-hand_7 289-350 aa
PF01699
Na_Ca_ex 411-555 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766434.1 |
Pfam | PF01699 |
Na_Ca_ex | Family | 68 | 245 | 5.7e-23 | 82.3 | Sodium/calcium exchanger protein |
XP_057766434.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 289 | 350 | 7.7e-11 | 42.9 | EF-hand domain pair |
XP_057766434.1 |
Pfam | PF01699 |
Na_Ca_ex | Family | 411 | 555 | 5.7e-23 | 82.3 | Sodium/calcium exchanger protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。