当前解析结果
SmilChr05G002867| 统一新 Gene ID | SmilChr05G002867 |
|---|---|
| 名称 | SmilChr05G002867 |
| 描述 | probable E3 ubiquitin-protein ligase ZFP1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 34266991 - 34272885 / - |
| NCBI Gene ID | LOC130986943 |
|---|---|
| GeneID | 130986943 |
| locus_tag | - |
| NCBI Name | LOC130986943 |
| 原始查询 | SmilChr05G002867 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase ZFP1 |
| 产物 | probable E3 ubiquitin-protein ligase ZFP1 |
| Arabidopsis | AT1G53190 (AT1G53190)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841753] identity=31.7; qcov=1.01; evalue=1.44e-62; confidence=low |
| Rice | Os01g0667700 (OsRFP)- identity=29.9; qcov=1.02; evalue=4.57e-52; confidence=low |
| GO | GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986943 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057766482.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057766482.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766482.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766482.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766482.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:34267170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr5:34267286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr5:34267952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr5:34268479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr5:34268519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,C42,D8 |
Chr5:34268658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr5:34268662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:34268746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B17,B69,B75,B9 |
Chr5:34269092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C71 |
Chr5:34269259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr5:34269276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B56,B96,C4 |
Chr5:34269417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B22,B93,C42,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766482.1PF12678
zf-rbx1 489-532 aa
PF17123
zf-RING_11 491-518 aa
PF00097
zf-C3HC4 491-531 aa
PF13923
zf-C3HC4_2 491-531 aa
PF13639
zf-RING_2 491-532 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766482.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 489 | 532 | 1.4e-08 | 35.6 | RING-H2 zinc finger domain |
XP_057766482.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 491 | 518 | 1.8e-07 | 31.4 | RING-like zinc finger |
XP_057766482.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 491 | 531 | 7.5e-08 | 32.8 | Zinc finger, C3HC4 type (RING finger) |
XP_057766482.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 491 | 531 | 1.1e-07 | 32.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057766482.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 491 | 532 | 8.6e-13 | 49.0 | Ring finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。