Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002923`

染色体: Chr05 坐标: 35183081-35186228 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002923`
名称	SmilChr05G002923
描述	calcium/calmodulin-regulated receptor-like kinase 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	35183081 - 35186228 / `-`

ID 对照

NCBI Gene ID	`LOC130986992`
GeneID	`130986992`
locus_tag	`-`
NCBI Name	`LOC130986992`
原始查询	`SmilChr05G002923`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium/calmodulin-regulated receptor-like kinase 1
产物	calcium/calmodulin-regulated receptor-like kinase 1
Arabidopsis	`AT5G54590` (CRLK1) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835548] identity=65; qcov=0.963; evalue=1.29e-180; confidence=high
Rice	`Os08g0138700` (OsRLCK245) - identity=60.1; qcov=0.951; evalue=3.75e-163; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130986992

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057766520.1`
2	Nucleus	细胞核	0.00000	`XP_057766520.1`
3	Chromosome	染色体	0.00000	`XP_057766520.1`
4	Centromere	着丝粒	0.00000	`XP_057766520.1`
5	Chromatin	染色质	0.00000	`XP_057766520.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:35183200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,C61,D2
`Chr5:35183612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B129,C17,C36
`Chr5:35183615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr5:35184746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,C47
`Chr5:35185435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,C60,C62,C82
`Chr5:35185453`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B38,B39,B56,B96,C8
`Chr5:35185453`	`TC`	`T`	1bp_deletion	CDS_variant	5	B38,B39,B56,B96,C8
`Chr5:35185455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,C42
`Chr5:35185595`	`ATC`	`A`	2bp_deletion	frameshift_variant	97	A10,A14,A15,A18,A19,A22,A7,B102,B105,B106,B107,B109,B111,B114,B119,B123,B124,B127,B128,B132,B133,B137,B138,B139,B15,B2,B23,B24,B28,B31,B34,B36,B42,B43,B5,B50,B56,B60,B61,B64,B66,B67,B71,B72,B73,B76,B78,B79,B81,B84,B86,B88,B9,B96,B99,C1,C11,C13,C14,C15,C16,C17,C20,C22,C23,C27,C30,C32,C34,C38,C39,C41,C42,C43,C46,C47,C48,C49,C5,C52,C53,C57,C59,C64,C66,C68,C69,C71,C76,C77,C83,C86,C87,C9,D11,D5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766520.1

406 aa

203

406

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 105-365 aa PF00069 Pkinase 107-363 aa

XP_057766521.1

406 aa

203

406

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 105-365 aa PF00069 Pkinase 107-363 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766520.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	105	365	1.4e-49	169.5	Protein tyrosine and serine/threonine kinase
`XP_057766520.1`	Pfam	`PF00069`	Pkinase	Domain	107	363	7.6e-48	163.9	Protein kinase domain
`XP_057766521.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	105	365	1.4e-49	169.5	Protein tyrosine and serine/threonine kinase
`XP_057766521.1`	Pfam	`PF00069`	Pkinase	Domain	107	363	7.6e-48	163.9	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910538.1
GTTCGCACCCACATAAGATTACTTTTTGGCACTTTTTTTATATCGTTTTTTTTAAGCTATCCTTTTCTTCAAACTCCTGTATCCATCCACCTTCTCATTCCATTTCCTTCAAACGCTCGCTTGTTTGCTTTCACCCCAGCCACCAAAAATGAATATTAAAATAAAGAAAACCTTCCTATAGTTCCGCAGAAACAAACAAGAGAAGAGACTAGAGAAGAATAAATTTCATATGCATTGTTGAAGTGGGAGCAGAGATGAGA...

XM_057910537.1
TGGTCATACGCTCTTCTTAAGAAAATCAGATGTGTTTTTTCAGCATTTTATGCTATCAAACAAATTGCGGCAGAAATATTCTCAACTTGTTTAGTTTTGTCAACTTCAATAATATTTTTGTTGGAGCTCCAAATGGCGTCTGCATGTAGTTGCCGTTGCTCAATATTGTTTGATTCCGACAGATCTCTTGAGCAAAACATGTCTATTTCTTGAGAAAATATGTTTGCTCATGGTGTCTATCTTCTTCTTTTGATTTAGTT...

CDS

2 records

下载 CDS FASTA

LOC130986992
ATGAGAGAAGAGGCATTAGGCTCCCTAATTGGTGTATCGGTTGGAGTGGTGATTGGAGTAGCTCTGGCTATAGTTGCTTTCTTTTGCATCAGATATATCAGGAATAGCAATTGTAGGAGGGCTGCAAGAATCCAAATTTCTGGACGCCCAGCTGATTCTTGCACCACCATTTCAGACTCATCTGCTGAGACTGAGTCTACCTCGCCGGGTGGCTTGTCATTGTGGCCGAGGGGACTTAAGAAGGCCAATGTGATTCCTGC...

Protein

2 records

下载 Protein FASTA

XP_057766520.1
MREEALGSLIGVSVGVVIGVALAIVAFFCIRYIRNSNCRRAARIQISGRPADSCTTISDSSAETESTSPGGLSLWPRGLKKANVIPASEILKYSYKDLEKATSNFTTLIGQGAFGPVYRAQMSTGETVAVKVLAKDSRQGEKEFLTEVRLLGRLHHRNLVNLVGYCVEKQHHMLVYVYMCRGSLASHLYSEKLEALDWELRVEIALDVAKALEYLHDGAVPSVIHCDIKSSNILLDSSMRARVADFGLSREETVSTHAPD...

XP_057766521.1
MREEALGSLIGVSVGVVIGVALAIVAFFCIRYIRNSNCRRAARIQISGRPADSCTTISDSSAETESTSPGGLSLWPRGLKKANVIPASEILKYSYKDLEKATSNFTTLIGQGAFGPVYRAQMSTGETVAVKVLAKDSRQGEKEFLTEVRLLGRLHHRNLVNLVGYCVEKQHHMLVYVYMCRGSLASHLYSEKLEALDWELRVEIALDVAKALEYLHDGAVPSVIHCDIKSSNILLDSSMRARVADFGLSREETVSTHAPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器