当前解析结果
SmilChr05G002924| 统一新 Gene ID | SmilChr05G002924 |
|---|---|
| 名称 | SmilChr05G002924 |
| 描述 | uncharacterized SmilChr05G002924 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 35207181 - 35223351 / + |
| NCBI Gene ID | LOC131025845 |
|---|---|
| GeneID | 131025845 |
| locus_tag | - |
| NCBI Name | LOC131025845 |
| 原始查询 | SmilChr05G002924 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| 产物 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=28.5; qcov=0.316; evalue=1.18e-46; confidence=low |
| Rice | Os06g0484800- identity=27.8; qcov=0.338; evalue=1.6e-46; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811613.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057811613.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057811613.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811613.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811613.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:35207192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,A25 |
Chr5:35207262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B47,B83,C72 |
Chr5:35207311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B110,B47 |
Chr5:35207312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B10,B135,B58 |
Chr5:35207316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B73,C2 |
Chr5:35207347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B61,C11,C69 |
Chr5:35207362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B110,B86 |
Chr5:35207373 |
C |
T |
EMS_canonical_SNV | stop_gained | 21 | A25,A8,B120,B126,B27,B4,B5,B53,B55,B87,C10,C26,C42,C44,C45,C58,C60,C72,C84,D8,D9 |
Chr5:35207386 |
G |
GT |
1bp_insertion | frameshift_variant | 13 | A25,A4,A5,B110,B42,B43,B45,B62,B65,C7,C70,C80,C82 |
Chr5:35207387 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | A25,A8,B126,B27,B4,B53,B55,B87,C10,C42,C44,C45,C58,C60,C72,C84,D8,D9 |
Chr5:35207388 |
GT |
G |
1bp_deletion | frameshift_variant | 19 | A8,B126,B27,B52,B53,B55,B87,C10,C37,C42,C44,C45,C58,C60,C61,C72,C84,D8,D9 |
Chr5:35207429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,C42,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811613.1PF03372
Exo_endo_phos 5-220 aa
PF00078
RVT_1 515-659 aa
PF13966
zf-RVT 917-995 aa
PF13456
RVT_3 1125-1245 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811613.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 5 | 220 | 1.3e-06 | 29.1 | Endonuclease/Exonuclease/phosphatase family |
XP_057811613.1 |
Pfam | PF00078 |
RVT_1 | Domain | 515 | 659 | 3.2e-12 | 47.5 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811613.1 |
Pfam | PF13966 |
zf-RVT | Domain | 917 | 995 | 3.5e-12 | 47.5 | zinc-binding in reverse transcriptase |
XP_057811613.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1125 | 1245 | 1.9e-15 | 57.6 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。