当前解析结果
SmilChr05G002926| 统一新 Gene ID | SmilChr05G002926 |
|---|---|
| 名称 | SmilChr05G002926 |
| 描述 | uncharacterized SmilChr05G002926 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 35265326 - 35266288 / + |
| NCBI Gene ID | LOC131025847 |
|---|---|
| GeneID | 131025847 |
| locus_tag | - |
| NCBI Name | LOC131025847 |
| 原始查询 | SmilChr05G002926 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=29; qcov=0.572; evalue=2.99e-25; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025847 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811615.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057811615.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057811615.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057811615.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057811615.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:35265328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B122,B93 |
Chr5:35265337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,D8 |
Chr5:35265413 |
C |
T |
EMS_canonical_SNV | stop_gained | 18 | A2,B11,B121,B131,B8,B87,C11,C20,C26,C33,C4,C60,C62,C69,C82,C83,D2,D8 |
Chr5:35265414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr5:35265424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C60,C62,C82 |
Chr5:35265431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B8,C20,C4,D8 |
Chr5:35265439 |
T |
TA |
1bp_insertion | frameshift_variant | 16 | B107,B119,B128,B133,B139,B15,B24,B61,B64,B84,C41,C43,C49,C71,C77,D5 |
Chr5:35265454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B101,B75,B94,C6 |
Chr5:35265488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B110,B122,B93 |
Chr5:35265493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,D6 |
Chr5:35265499 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B37 |
Chr5:35265499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。