Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002932`

染色体: Chr05 坐标: 35358654-35364484 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002932`
名称	SmilChr05G002932
描述	putative beta-glucosidase 41
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	35358654 - 35364484 / `+`

ID 对照

NCBI Gene ID	`LOC130986997`
GeneID	`130986997`
locus_tag	`-`
NCBI Name	`LOC130986997`
原始查询	`SmilChr05G002932`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative beta-glucosidase 41
产物	putative beta-glucosidase 41
Arabidopsis	`AT5G54570` (BGLU41) beta glucosidase 41 [Source:NCBI gene (formerly Entrezgene);Acc:835545] identity=70.3; qcov=0.986; evalue=0; confidence=high
Rice	`Os03g0212800` (Os3bglu6) - identity=59; qcov=0.99; evalue=0; confidence=high
GO	GO:0005975 (carbohydrate metabolic process); GO:0008422 (beta-glucosidase activity)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00232 (Glyco_hydro_1)
InterPro	-
eggNOG	-
NR	GeneID:130986997

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057766526.1`
2	Peroxisome	过氧化物酶体	0.60000	`XP_057766529.1`
3	Endoplasmic reticulum	内质网	0.60000	`XP_057766531.1`
4	Cytoplasm	细胞质	0.20000	`XP_057766529.1`
5	Cytosol	细胞质基质	0.20000	`XP_057766530.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:35358967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr5:35359049`	`G`	`GT`	1bp_insertion	frameshift_variant	1	D7
`Chr5:35359049`	`G`	`GT`	1bp_insertion	CDS_variant	1	D7
`Chr5:35359060`	`A`	`ATG`	2bp_insertion	frameshift_variant	115	A13,A15,A16,A18,A2,A20,A23,A24,A25,A4,A5,A7,A8,A9,B10,B101,B105,B109,B11,B111,B113,B114,B115,B119,B12,B120,B121,B122,B126,B129,B13,B137,B138,B140,B16,B17,B18,B20,B21,B22,B25,B27,B3,B30,B34,B35,B36,B37,B4,B40,B44,B45,B47,B48,B49,B50,B55,B62,B64,B67,B68,B69,B7,B78,B85,B87,B88,B93,B94,B98,C12,C15,C19,C2,C23,C27,C28,C3,C31,C33,C34,C35,C38,C4,C40,C44,C46,C48,C50,C51,C53,C54,C56,C58,C6,C60,C61,C62,C63,C65,C67,C70,C73,C74,C75,C78,C8,C80,C81,C82,C85,D1,D3,D5,D7
`Chr5:35359167`	`GAC`	`G`	2bp_deletion	frameshift_variant	1	C86
`Chr5:35359167`	`GAC`	`G`	2bp_deletion	CDS_variant	1	C86
`Chr5:35360166`	`AT`	`A`	1bp_deletion	frameshift_variant	1	D1
`Chr5:35360166`	`AT`	`A`	1bp_deletion	CDS_variant	1	D1
`Chr5:35360171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B110,B122,B93
`Chr5:35360215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr5:35361921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,B40,C35
`Chr5:35361966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B23,C73,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766526.1

502 aa

251

502

Glyco_hydro_1

PF00232 Glyco_hydro_1 24-494 aa

XP_057766527.1

485 aa

242

485

Glyco_hydro_1

PF00232 Glyco_hydro_1 24-477 aa

XP_057766528.1

480 aa

240

480

Glyco_hydro_1

PF00232 Glyco_hydro_1 61-472 aa

XP_057766529.1

458 aa

229

458

Glyco_hydro_1

PF00232 Glyco_hydro_1 39-450 aa

XP_057766530.1

428 aa

214

428

Glyco_hydro_1

PF00232 Glyco_hydro_1 89-420 aa

XP_057766531.1

421 aa

210

421

Glyco_hydro_1

PF00232 Glyco_hydro_1 82-413 aa

XP_057766532.1

414 aa

207

414

Glyco_hydro_1

PF00232 Glyco_hydro_1 1-406 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766526.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	24	494	4.9e-161	537.0	Glycosyl hydrolase family 1
`XP_057766527.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	24	477	3.6e-142	474.9	Glycosyl hydrolase family 1
`XP_057766528.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	61	472	6.2e-136	454.3	Glycosyl hydrolase family 1
`XP_057766529.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	39	450	1.7e-133	446.2	Glycosyl hydrolase family 1
`XP_057766530.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	89	420	5e-91	306.3	Glycosyl hydrolase family 1
`XP_057766531.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	82	413	5.8e-94	315.9	Glycosyl hydrolase family 1
`XP_057766532.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	1	406	1e-130	437.1	Glycosyl hydrolase family 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009089530.1
AGAGATTGCTTCAGAGGCTGCCAACGGAAAAGCACATCACACTACGCCTTTTTGACAGCGACAAACCGGAGTCGTTTGTTTCTCTCCAATTTTCGTGGCTTCAAAACAATTTCTTGTTTCATCAAATATCCAACCTCACTTAACCCACTACGCCACAACCATTTTTTAAATTTTTTACACGCAATTATTTATATAAACCAATACCAAAACTTCAAATGCATAATTAATTAAGGAGCTAGCTTAGCCACATGTAATTTGTG...

XM_057910548.1
CTGCCAACGGAAAAGCACATCACACTACGCCTTTTTGACAGCGACAAACCGGAGTCGTTTGTTTCTCTCCAATTTTCGTGGCTTCAAAACAATTTCTTGTTTCATCAAATATCCAACCTCACTTAACCCACTACGCCACAACCATTTTTTAAATTTTTTACACGCAATTATTTATATAAACCAATACCAAAACTTCAAATGCATAATTAATTAAGGAGCTAGCTTAGCCACATGTAATTTGTGCATGATAAGAAAATGGC...

CDS

7 records

下载 CDS FASTA

LOC130986997
ATGGCAGCTATCTTGACTTTGTTTTTGTCTGTGCTGGCATTCTTTGTTGTGGTGTCCCAGTCCATTAGCAGAGATGATTTTCCACATGGTTTCATTTTTGGAACTGCTTCTTCAGCTTACCAGTTTGAAGGAGCTGCGAATGAAGGAAATAAAGGACAGAGCATATGGGATACCTTCACTAGGAAACCAGGAAGAATATTGGATTTCAGCAATGCAGACACCGCGGTTGATCAATATCATCGGTTCAAGAGTGACATAGA...

Protein

7 records

下载 Protein FASTA

XP_057766526.1
MAAILTLFLSVLAFFVVVSQSISRDDFPHGFIFGTASSAYQFEGAANEGNKGQSIWDTFTRKPGRILDFSNADTAVDQYHRFKSDIDLMADLGMDAYRFSISWSRILPNGTGEPNPHGIAYYNNLIDSLIEKGIQPYATLYHWDLPQMLEDAYGGLLSNQVVHDFEKYAYVCFKAFGDRVKHWMTFNEPHGIAIQGYDFGVQAPGRCSILGHLICKAGKSSVEPYVVAHNVLLSHAAAYRTYHNNFKKIQKGVVGIVLDA...

XP_057766527.1
MAAILTLFLSVLAFFVVVSQSISRDDFPHGFIFGTASSAYQFEGAANEGNKGQSIWDTFTRKPGRILDFSNADTAVDQYHRFKSDIDLMADLGMDAYRFSISWSRILPNGTGEPNPHGIAYYNNLIDSLIEKEDAYGGLLSNQVVHDFEKYAYVCFKAFGDRVKHWMTFNEPHGIAIQGYDFGVQAPGRCSILGHLICKAGKSSVEPYVVAHNVLLSHAAAYRTYHNNFKKIQKGVVGIVLDAKWYEPISQSEEDVEASQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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