Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002954`

染色体: Chr05 坐标: 35699425-35702715 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002954`
名称	SmilChr05G002954
描述	uncharacterized SmilChr05G002954
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	35699425 - 35702715 / `+`

ID 对照

NCBI Gene ID	`LOC130987015`
GeneID	`130987015`
locus_tag	`-`
NCBI Name	`LOC130987015`
原始查询	`SmilChr05G002954`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	transcriptional regulator ATRX-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835476]; symbol=AT5G53930; hit=AT5G53930; species=arabidopsis; confidence=weak
产物	transcriptional regulator ATRX-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835476]; symbol=AT5G53930; hit=AT5G53930; species=arabidopsis; confidence=weak
Arabidopsis	`AT5G53930` (AT5G53930) transcriptional regulator ATRX-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835476] identity=77.3; qcov=0.091; evalue=8.65e-15; confidence=weak
Rice	`Os07g0107900` (P0585H11.111) - identity=58.7; qcov=0.131; evalue=3.16e-12; confidence=weak
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130987015

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766553.1`
2	Chromosome	染色体	0.00000	`XP_057766553.1`
3	Centromere	着丝粒	0.00000	`XP_057766553.1`
4	Chromatin	染色质	0.00000	`XP_057766553.1`
5	Telomere	端粒	0.00000	`XP_057766553.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:35700418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,D1,D2
`Chr5:35700543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr5:35700657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B139,C4
`Chr5:35700868`	`A`	`AG`	1bp_insertion	frameshift_variant	1	D3
`Chr5:35700868`	`A`	`AG`	1bp_insertion	CDS_variant	1	D3
`Chr5:35700882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,C28
`Chr5:35700935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B64,C28
`Chr5:35700967`	`CAA`	`C`	2bp_deletion	frameshift_variant	25	B106,B107,B110,B117,B2,B23,B31,B46,B5,B64,B67,B75,B80,B94,C13,C16,C20,C28,C42,C46,C52,C59,C75,C83,C9
`Chr5:35700984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr5:35701634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr5:35701685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr5:35702504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C22,C30

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057910571.1
TTTCGAAATATCGTGAAAATTGAGCACACGAGGTGTAATTATAGCATGTAGTATTAATATAAGTTGTAAAAACGACATGTAATTTTGTTAACTTGGATTGGAAAGTATATTCGGAGTACAGAAACAGATTGTAGAAAACTGTATCCCTAAGCCGTTCCGATTCTTTTCCCATCTTCCCTTTGCAATCTTCCGCCAACTACAATTTGTTCTTGTTGATTTTCTTAACTTTTAGTCTGTAGCCCACTTTAATTAACTAATTG...

XM_057910570.1
GTAGTATTAATATAAGTTGTAAAAACGACATGTAATTTTGTTAACTTGGATTGGAAAGTATATTCGGAGTACAGAAACAGATTGTAGAAAACTGTATCCCTAAGCCGTTCCGATTCTTTTCCCATCTTCCCTTTGCAATCTTCCGCCAACTACAATTTGTTCTTGTTGATTTTCTTAACTTTTAGTCTGTAGCCCACTTTAATTAACTAATTGATTTTGGGTTTTGTTCTCTGCTTGATAATATCCTTTGCAGGAAGAAC...

CDS

4 records

下载 CDS FASTA

LOC130987015
ATGGGAAGCAGGCCTTCTTCTAAACGAAAGTCGAGAGGCGACAAAATTTCATCCAAGCATTTCCAGAAGAAGAGTAGAAGAAAGGAATCAAAGAAGCGTCGCCGGAGTTATGATTCAGTTAGTTCATCTTCTGATGATGACTCATTGTACTTGGAGCATAAATCCTCCACTTCAAAATCTGATCATAGGAGAAGGATAACTAAAACTAACAAGCGACGTCATGACTCTCGTTTGTCAGATTATCAGTCAGATTCTGATTC...

LOC130987015
ATGGGAAGCAGGCCTTCTTCTAAACGAAAGTCGAGAGGCGACAAAATTTCATCCAAGAAGAAGAGTAGAAGAAAGGAATCAAAGAAGCGTCGCCGGAGTTATGATTCAGTTAGTTCATCTTCTGATGATGACTCATTGTACTTGGAGCATAAATCCTCCACTTCAAAATCTGATCATAGGAGAAGGATAACTAAAACTAACAAGCGACGTCATGACTCTCGTTTGTCAGATTATCAGTCAGATTCTGATTCCTCATCCAC...

Protein

4 records

下载 Protein FASTA

XP_057766553.1
MGSRPSSKRKSRGDKISSKHFQKKSRRKESKKRRRSYDSVSSSSDDDSLYLEHKSSTSKSDHRRRITKTNKRRHDSRLSDYQSDSDSSSTDDNDYKMRKARRSRVGLRDVKRKRRKRSISSIADVDATGGRKRKRSGKDHVIKPIKKSSKKKSRNVVYSSSGSDSKSRSSSQSRSRSRSSSGDDKRQKNKVVPDKEKERLRRRQSHMDKQKHEDRSPSCTSIGRGGDPSFSVSSSDREPFPVDNSRRLRSVIAVADQPRG...

XP_057766554.1
MGSRPSSKRKSRGDKISSKKKSRRKESKKRRRSYDSVSSSSDDDSLYLEHKSSTSKSDHRRRITKTNKRRHDSRLSDYQSDSDSSSTDDNDYKMRKARRSRVGLRDVKRKRRKRSISSIADVDATGGRKRKRSGKDHVIKPIKKSSKKKSRNVVYSSSGSDSKSRSSSQSRSRSRSSSGDDKRQKNKVVPDKEKERLRRRQSHMDKQKHEDRSPSCTSIGRGGDPSFSVSSSDREPFPVDNSRRLRSVIAVADQPRGKDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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