当前解析结果
SmilChr05G002980| 统一新 Gene ID | SmilChr05G002980 |
|---|---|
| 名称 | SmilChr05G002980 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 36333557 - 36334765 / - |
| NCBI Gene ID | LOC131025860 |
|---|---|
| GeneID | 131025860 |
| locus_tag | - |
| NCBI Name | LOC131025860 |
| 原始查询 | SmilChr05G002980 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=33.8; qcov=0.803; evalue=7.7e-53; confidence=low |
| Rice | Os06g0166100- identity=39.9; qcov=0.774; evalue=1.4e-70; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025860 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811630.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057811630.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811630.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811630.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811630.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:36333616 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A1,B21,B31,B44,B74,C37,C51,C6,C77,C82 |
Chr5:36333617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C75,C76,D4 |
Chr5:36333646 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B121,B54,C26,C36 |
Chr5:36333646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,B54,C26,C36 |
Chr5:36333667 |
AG |
A |
1bp_deletion | frameshift_variant | 10 | A15,B100,B119,B133,B139,B24,B66,B84,C41,D5 |
Chr5:36333672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,C32,C68,C69 |
Chr5:36333675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C35 |
Chr5:36333683 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A19,B110,B13,B43,B60,C2,C32,C68 |
Chr5:36333688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,C10,C7,C84,D3 |
Chr5:36333693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B2,C4,C67 |
Chr5:36333711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr5:36333757 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,C22,C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811630.1PF03101
FAR1 103-193 aa
PF21056
ZSWIM1-3_RNaseH-like 285-398 aa
PF10551
MULE 315-402 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811630.1 |
Pfam | PF03101 |
FAR1 | Domain | 103 | 193 | 3.1e-16 | 60.6 | FAR1 DNA-binding domain |
XP_057811630.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 285 | 398 | 1.7e-09 | 38.4 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057811630.1 |
Pfam | PF10551 |
MULE | Domain | 315 | 402 | 8.1e-25 | 87.8 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。