Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003007`

染色体: Chr05 坐标: 37311763-37316953 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003007`
名称	SmilChr05G003007
描述	probable beta-1,3-galactosyltransferase 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	37311763 - 37316953 / `-`

ID 对照

NCBI Gene ID	`LOC131024299`
GeneID	`131024299`
locus_tag	`-`
NCBI Name	`LOC131024299`
原始查询	`SmilChr05G003007`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable beta-1,3-galactosyltransferase 2
产物	probable beta-1%2C3-galactosyltransferase 2
Arabidopsis	`AT1G05170` (AT1G05170) Galactosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839292] identity=75.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0577500` - identity=72.2; qcov=0.988; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0016758 (hexosyltransferase activity)
KEGG	-
Pfam	PF01762 (Galactosyl_T); PF02434 (Fringe); PF13334 (DUF4094)
InterPro	-
eggNOG	-
NR	GeneID:131024299

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057809798.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057809798.1`
3	Nucleus	细胞核	0.00000	`XP_057809798.1`
4	Chromosome	染色体	0.00000	`XP_057809798.1`
5	Centromere	着丝粒	0.00000	`XP_057809798.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:37312215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B101,B13,C60
`Chr5:37313178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,C4
`Chr5:37314101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B75,D6
`Chr5:37315359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,C75,C9
`Chr5:37316256`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809798.1

405 aa

202

405

DUF4094

Galactosyl_T

Fringe

PF13334 DUF4094 17-110 aa PF01762 Galactosyl_T 150-347 aa PF02434 Fringe 215-318 aa

XP_057809799.1

404 aa

202

404

DUF4094

Galactosyl_T

Fringe

PF13334 DUF4094 17-109 aa PF01762 Galactosyl_T 149-346 aa PF02434 Fringe 214-317 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809798.1`	Pfam	`PF13334`	DUF4094	Family	17	110	1.1e-32	113.1	Domain of unknown function (DUF4094)
`XP_057809798.1`	Pfam	`PF01762`	Galactosyl_T	Family	150	347	5.1e-51	174.0	Galactosyltransferase
`XP_057809798.1`	Pfam	`PF02434`	Fringe	Domain	215	318	0.00013	22.0	Fringe-like
`XP_057809799.1`	Pfam	`PF13334`	DUF4094	Family	17	109	2.4e-32	112.0	Domain of unknown function (DUF4094)
`XP_057809799.1`	Pfam	`PF01762`	Galactosyl_T	Family	149	346	5.1e-51	174.0	Galactosyltransferase
`XP_057809799.1`	Pfam	`PF02434`	Fringe	Domain	214	317	0.00012	22.1	Fringe-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953815.1
GCGCTGTAATTTGTTTATTTCTTCGTCAACTTTGAAGTACAGAAAGAAATTTAAAAAGAAAAACAGAGAGAGAAGAGAGAGAGTGCAGTTGGGTTGGGTGGGCGGTGGGTCTATTCTTCTGTTCCTTTCTTCTCAAATTCCACATTACCACTACTCCTACTTCATCTTCTTCATCAATTCTTCTCCTCTCTCGCATTCCATTTCCCATTATACACGTTCACGTATACATATTAATCACAGCCCTTTTTCGTGTGCATATC...

XM_057953816.1
TGTTTATTTCTTCGTCAACTTTGAAGTACAGAAAGAAATTTAAAAAGAAAAACAGAGAGAGAAGAGAGAGAGTGCAGTTGGGTTGGGTGGGCGGTGGGTCTATTCTTCTGTTCCTTTCTTCTCAAATTCCACATTACCACTACTCCTACTTCATCTTCTTCATCAATTCTTCTCCTCTCTCGCATTCCATTTCCCATTATACACGTTCACGTATACATATTAATCACAGCCCTTTTTCGTGTGCATATCTATTTGTGTGC...

CDS

2 records

下载 CDS FASTA

LOC131024299
ATGTCTTGGAAGAGCAGAGGAGTAGAGTCACCTTCGAAGAATCTAGTTTCGAGAAATCTCGCCCTTCTTCTCTGTGTTGGCTGCTTCTGCGCTGGAATGCTCTTCACCGACAGGATGTGGGCACTTCCAGAAGCTAAAGATATATCAAGGTCAAGAGGGATTGCTGACGAAAAGCTTCAGTTAGTCTCAGATGGTTGTGATCCAAAAGTTGATGTGAAATGGGGTTCCAAGGATGTATCAAATACAGCGTCAAGGACACA...

LOC131024299
ATGTCTTGGAAGAGCAGAGGAGTAGAGTCACCTTCGAAGAATCTAGTTTCGAGAAATCTCGCCCTTCTTCTCTGTGTTGGCTGCTTCTGCGCTGGAATGCTCTTCACCGACAGGATGTGGGCACTTCCAGAAGCTAAAGATATATCAAGGTCAAGAGGGATTGCTGACGAAAAGCTTCAGTTAGTCTCAGATGGTTGTGATCCAAAAGTTAAGGATGTGAAATGGGGTTCCAAGGATGTATCAAATACAGCGTCAAGGAC...

Protein

2 records

下载 Protein FASTA

XP_057809798.1
MSWKSRGVESPSKNLVSRNLALLLCVGCFCAGMLFTDRMWALPEAKDISRSRGIADEKLQLVSDGCDPKVKDVKWGSKDVSNTASRTHDTVQTLDKTISNLEMELAAARAVQDSLLSGSPISEDLKIPELTRKRKYLMVIGINTAFSSRKRRDSVRATWMLQGGKRKQLEEEKGIVIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFTTAVQLWDADFYVKVDDDVHVNIATLGATLARHRS...

XP_057809799.1
MSWKSRGVESPSKNLVSRNLALLLCVGCFCAGMLFTDRMWALPEAKDISRSRGIADEKLQLVSDGCDPKVDVKWGSKDVSNTASRTHDTVQTLDKTISNLEMELAAARAVQDSLLSGSPISEDLKIPELTRKRKYLMVIGINTAFSSRKRRDSVRATWMLQGGKRKQLEEEKGIVIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFTTAVQLWDADFYVKVDDDVHVNIATLGATLARHRSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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