Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003013`

染色体: Chr05 坐标: 37478746-37480768 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003013`
名称	SmilChr05G003013
描述	uncharacterized SmilChr05G003013
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	37478746 - 37480768 / `+`

ID 对照

NCBI Gene ID	`LOC131025874`
GeneID	`131025874`
locus_tag	`-`
NCBI Name	`LOC131025874`
原始查询	`SmilChr05G003013`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006]; symbol=AT2G15180; hit=AT2G15180; species=arabidopsis; confidence=weak
产物	Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006]; symbol=AT2G15180; hit=AT2G15180; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G15180` (AT2G15180) Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006] identity=37.1; qcov=0.123; evalue=2.27e-08; confidence=weak
Rice	`Os02g0566300` - identity=25.2; qcov=0.637; evalue=1.4e-06; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF30863 (PRO_PEG10-RTL1); PF30901 (PEG10-RTL1_C-capsid)
InterPro	-
eggNOG	-
NR	GeneID:131025874

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057811642.1`
2	Cytoplasm	细胞质	0.80000	`XP_057811642.1`
3	Cytosol	细胞质基质	0.40000	`XP_057811642.1`
4	Nucleoplasm	核质	0.20000	`XP_057811642.1`
5	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057811642.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:37478755`	`AC`	`A`	1bp_deletion	frameshift_variant	28	A21,A3,A4,B118,B119,B121,B15,B17,B22,B24,B43,B48,B49,B67,B7,B77,B82,B87,B94,B99,C37,C39,C43,C52,C61,C64,C80,C81
`Chr5:37478778`	`G`	`GC`	1bp_insertion	frameshift_variant	92	A13,A15,A22,A24,A5,B10,B100,B103,B104,B106,B108,B109,B11,B122,B128,B129,B135,B137,B138,B139,B14,B140,B2,B26,B27,B28,B3,B32,B38,B4,B41,B44,B45,B55,B56,B57,B59,B6,B62,B65,B66,B73,B77,B80,B83,B84,B85,B88,B90,B95,C13,C14,C15,C17,C18,C20,C22,C25,C27,C28,C29,C30,C33,C43,C44,C45,C47,C49,C5,C50,C51,C56,C59,C6,C65,C69,C7,C72,C75,C79,C8,C82,C83,C84,C87,C9,D10,D3,D4,D5,D7,D8
`Chr5:37478804`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,C78
`Chr5:37478815`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C27,C64
`Chr5:37478821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:37478842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B82,B87,C81
`Chr5:37478851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,B87
`Chr5:37478866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B45,D1
`Chr5:37478867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B13,B65,C28
`Chr5:37478870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:37478891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:37478893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C18,C29,C72,D2,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811642.1

567 aa

284

567

PEG10_N-capsid

PEG10-RTL1_C-capsid

zf-CCHC

PRO_PEG10-RTL1

PF03732 PEG10_N-capsid 84-166 aa PF30901 PEG10-RTL1_C-capsid 176-249 aa PF00098 zf-CCHC 314-331 aa PF30863 PRO_PEG10-RTL1 406-483 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811642.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	84	166	1.1e-19	71.2	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057811642.1`	Pfam	`PF30901`	PEG10-RTL1_C-capsid	Domain	176	249	1.7e-07	31.8	PEG10/RTL1, C-terminal capsid-like domain
`XP_057811642.1`	Pfam	`PF00098`	zf-CCHC	Domain	314	331	1e-05	26.1	Zinc knuckle
`XP_057811642.1`	Pfam	`PF30863`	PRO_PEG10-RTL1	Domain	406	483	1e-07	33.1	PEG10/RTL1 protease domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955659.1
ATGGAAAACACAAATCCTATTGAATTTACATTGCAAGCCATGCAACAACAATTTGCAAGGTTTGGAGCTGTTATGGAAAATATAACAGAACGATTGGAGAGGCTAGAATTTCAAGCACCACCGAGGAATGAGGAGGAAGGAGAGAGCGAAGGAGAAGATGATCGTACATCAACACATCGAAATGAAAGGCGAGGAGGAGGTAGAAGAAGAAGACATCAAAATGAAGTTGATGGTGACTTGGGAAGCATCAAATTGAAGAT...

CDS

1 records

下载 CDS FASTA

LOC131025874
ATGGAAAACACAAATCCTATTGAATTTACATTGCAAGCCATGCAACAACAATTTGCAAGGTTTGGAGCTGTTATGGAAAATATAACAGAACGATTGGAGAGGCTAGAATTTCAAGCACCACCGAGGAATGAGGAGGAAGGAGAGAGCGAAGGAGAAGATGATCGTACATCAACACATCGAAATGAAAGGCGAGGAGGAGGTAGAAGAAGAAGACATCAAAATGAAGTTGATGGTGACTTGGGAAGCATCAAATTGAAGAT...

Protein

1 records

下载 Protein FASTA

XP_057811642.1
MENTNPIEFTLQAMQQQFARFGAVMENITERLERLEFQAPPRNEEEGESEGEDDRTSTHRNERRGGGRRRRHQNEVDGDLGSIKLKIPTFQGRSDPEAYLEWERKVELIFECHNYSEEKKVRLAAIEFTDYAIVWWDQLTTNRRRYRERPISTWEEMKSIMRKRFVPSHYFRELYQKLQSMNQGTKSVDEYYKEMEIAMIRANVDEDREATMARFLCGLNKEIANIVDLQHYVELEDMVHMAMKVERQLKKKGTFQRSFP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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