Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003024`

染色体: Chr05 坐标: 37780871-37793984 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003024`
名称	SmilChr05G003024
描述	putative aconitate hydratase, cytoplasmic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	37780871 - 37793984 / `+`

ID 对照

NCBI Gene ID	`LOC131024313`
GeneID	`131024313`
locus_tag	`-`
NCBI Name	`LOC131024313`
原始查询	`SmilChr05G003024`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative aconitate hydratase, cytoplasmic
产物	putative aconitate hydratase%2C cytoplasmic
Arabidopsis	`AT2G05710` (ACO3) aconitase 3 [Source:NCBI gene (formerly Entrezgene);Acc:815120] identity=84.3; qcov=0.94; evalue=0; confidence=high
Rice	`Os08g0191100` (OsACO1) - identity=87.3; qcov=0.928; evalue=0; confidence=high
GO	GO:0003994 (aconitate hydratase activity); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0006099 (tricarboxylic acid cycle); GO:0006101 (citrate metabolic process); GO:0051539 (4 iron, 4 sulfur cluster binding)
KEGG	smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00330 (Aconitase); PF00694 (Aconitase_C)
InterPro	-
eggNOG	-
NR	GeneID:131024313

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057809802.1`
2	Mitochondrion matrix	线粒体基质	0.60000	`XP_057809802.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057809802.1`
4	Nucleus	细胞核	0.00000	`XP_057809802.1`
5	Chromosome	染色体	0.00000	`XP_057809802.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:37781068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr5:37781102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B117,B33,B46,C75,C9
`Chr5:37781149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,C31,C34,C63,C67
`Chr5:37781248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:37783199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr5:37783616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr5:37788217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B9,C5
`Chr5:37788220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:37791067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B139,C4
`Chr5:37792137`	`T`	`TG`	1bp_insertion	frameshift_variant	167	A1,A10,A11,A13,A16,A18,A2,A20,A22,A23,A25,A3,A4,A6,B1,B10,B100,B101,B102,B103,B105,B106,B108,B11,B115,B117,B12,B120,B121,B122,B125,B127,B129,B13,B135,B139,B14,B140,B16,B18,B2,B20,B22,B23,B24,B26,B27,B28,B29,B3,B30,B31,B32,B34,B35,B37,B4,B41,B42,B43,B44,B45,B47,B48,B49,B5,B54,B55,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B71,B72,B73,B78,B8,B80,B82,B85,B86,B87,B89,B90,B91,B92,B93,B94,B95,B97,B98,C10,C13,C14,C16,C17,C18,C2,C20,C21,C22,C23,C24,C26,C27,C28,C3,C30,C35,C36,C37,C39,C4,C42,C45,C46,C48,C50,C51,C52,C53,C54,C56,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C70,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D4,D7,D8,D9
`Chr5:37792140`	`GA`	`G`	1bp_deletion	frameshift_variant	166	A1,A10,A11,A13,A16,A18,A2,A20,A22,A23,A25,A3,A4,A6,B1,B10,B100,B101,B102,B103,B105,B106,B108,B11,B115,B117,B12,B120,B121,B122,B125,B127,B129,B13,B135,B139,B14,B140,B16,B18,B2,B20,B22,B23,B24,B26,B27,B28,B29,B3,B30,B31,B32,B34,B35,B37,B4,B41,B42,B43,B44,B45,B47,B48,B49,B5,B54,B55,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B71,B72,B73,B78,B8,B80,B82,B85,B86,B87,B89,B90,B91,B92,B93,B94,B95,B97,B98,C10,C13,C14,C16,C17,C18,C2,C20,C21,C22,C23,C24,C26,C27,C28,C3,C30,C35,C36,C37,C39,C4,C42,C45,C46,C48,C50,C51,C52,C53,C54,C56,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C70,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D4,D7,D8,D9
`Chr5:37792423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809802.1

993 aa

496

993

Aconitase

Aconitase_C

PF00330 Aconitase 160-663 aa PF00694 Aconitase_C 792-920 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809802.1`	Pfam	`PF00330`	Aconitase	Family	160	663	1.2e-168	562.6	Aconitase family (aconitate hydratase)
`XP_057809802.1`	Pfam	`PF00694`	Aconitase_C	Domain	792	920	1.8e-41	142.3	Aconitase C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953819.1
GCTCGTTCCTCACACACTCCCGCCATCGATACATACACATTTTCGTATCTATACACAGTAACAAACTAGGCATTTATCACTGCCCTTTAGGGTTTCTGACAATAAAACTTTTATCTTTTAATCGGCTATGTACTTATCCACCTACTACGCTTCACCATCAACCTCGTCATCTCCTATTTTCAGAGCTTGTAGAGTTCGTTTCGCTACCACTCTTTTCTTCACAGCTTCTATCTCGCTCGCTCCGCCTTCTCGAACCTTCG...

CDS

1 records

下载 CDS FASTA

LOC131024313
ATGTACTTATCCACCTACTACGCTTCACCATCAACCTCGTCATCTCCTATTTTCAGAGCTTGTAGAGTTCGTTTCGCTACCACTCTTTTCTTCACAGCTTCTATCTCGCTCGCTCCGCCTTCTCGAACCTTCGCCAAGTGCTTGCCTCCGTCCAACACCCGCTGCCGATCGCTGAGCTTCTCTTCGGCGCTCCGGTGGAATCGCGGAGTTGAGTGGCGGTCACCTGCCTGTCTCAGAGCTCAGATCAGGACTGATTCACC...

Protein

1 records

下载 Protein FASTA

XP_057809802.1
MYLSTYYASPSTSSSPIFRACRVRFATTLFFTASISLAPPSRTFAKCLPPSNTRCRSLSFSSALRWNRGVEWRSPACLRAQIRTDSPALERKIATMAAEHPFNGILFGLPKPGGGEFGKFYSLPALNDPRIDKLPYSIKILLESAIRNCDNFQVTKEDVEKIIDWEKSAPKQVEIPFKPARVLLQDFTGVPAVVDLASMREAIKDLGSTPDKINPLVPVDLVIDHSVQVDVARSENAVQANMDLEFKRNKERFAFLKWGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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