Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003026`

染色体: Chr05 坐标: 37881857-37885266 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003026`
名称	SmilChr05G003026
描述	uncharacterized SmilChr05G003026
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	37881857 - 37885266 / `+`

ID 对照

NCBI Gene ID	`LOC131024315`
GeneID	`131024315`
locus_tag	`-`
NCBI Name	`LOC131024315`
原始查询	`SmilChr05G003026`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828806]; symbol=AT4G26980; hit=AT4G26980; species=arabidopsis; confidence=high
产物	RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828806]; symbol=AT4G26980; hit=AT4G26980; species=arabidopsis; confidence=high
Arabidopsis	`AT4G26980` (AT4G26980) RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828806] identity=58.9; qcov=0.867; evalue=5.01e-111; confidence=high
Rice	`Os06g0679700` - identity=48.5; qcov=0.492; evalue=7.05e-35; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131024315

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809805.1`
2	Chromosome	染色体	0.00000	`XP_057809805.1`
3	Centromere	着丝粒	0.00000	`XP_057809805.1`
4	Chromatin	染色质	0.00000	`XP_057809805.1`
5	Telomere	端粒	0.00000	`XP_057809805.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:37882526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr5:37884201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr5:37884219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,C33,C78

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953822.1
CAAAAAATATAATGAAGAATGGAGAATTGAATGAATGAATGACAATTAGAACGAGTATTTGTTAAAGCAATTAAAATAAAATAACCACAGACATGAATTTACGTCGGCGAAAATGGGACGGCGGAGACAAAGATCGCTTATAACAAAACAAACCAAATTCCAAGATTTTTGCCTGTGAAATTCGTTAGCAGTCTTTCATGGAAAAGGGGAAATCCAAATATTCTGCAGGAACAGTGACCACTTCTTTGCGGGTTCTCCAC...

XM_057953823.1
ACAATTAGAACGAGTATTTGTTAAAGCAATTAAAATAAAATAACCACAGACATGAATTTACGTCGGCGAAAATGGGACGGCGGAGACAAAGATCGCTTATAACAAAACAAACCAAATTCCAAGATTTTTGCCTGTGAAATTCGTTAGCAGTCTTTCATGGAAAAGGGGAAATCCAAATATTCTGCAGGAACAGTGACCACTTCTTTGCGGGTTCTCCACTTGGATAATAATTCAAAATCAACCCCAAATTCGGTTGCTTT...

CDS

2 records

下载 CDS FASTA

LOC131024315
ATGGAAAAGGGGAAATCCAAATATTCTGCAGGAACAGTGACCACTTCTTTGCGGGTTCTCCACTTGGATAATAATTCAAAATCAACCCCAAATTCGGTTGCTTTCCCTCTTCAATCTCAATCGTTTAGTACCAATAAGAGAAAGGCGCCAACCTTATTGAGTTTGTGTCTGGGAGTCGTAGGTTGCAATCTTGAAGACATCATTGATGACTTTGCCGAGATTGCCATCGCGTTCCCTTCCGATATTAAGATGGTATTGGT...

LOC131024315
ATGGAAAAGGGGAAATCCAAATATTCTGCAGGAACAGTGACCACTTCTTTGCGGGTTCTCCACTTGGATAATAATTCAAAATCAACCCCAAATTCGGTTGCTTTCCCTCTTCAATCTCGTTGCAATCTTGAAGACATCATTGATGACTTTGCCGAGATTGCCATCGCGTTCCCTTCCGATATTAAGATGGTATTGGTGGCTATTGCGAGAAGAAGAAAGCTGCTGAATGATGATTTCTTGGTTGCCTTAGTCGATAGTTC...

Protein

2 records

下载 Protein FASTA

XP_057809805.1
MEKGKSKYSAGTVTTSLRVLHLDNNSKSTPNSVAFPLQSQSFSTNKRKAPTLLSLCLGVVGCNLEDIIDDFAEIAIAFPSDIKMVLVAIARRRKLLNDDFLVALVDSSWEILDMSGSDVSDSGLSHVVNICHNLKAIDIRLCTRLTPTGVSELLQRCRSLEILRWGGCARSDSVVRRCLSLLEPNLNDVAGDSWEDLDAVELIQGASLRWLVWPTIDKDSQETLTFECPRIVVNPKPSLLGYRGTEVPQEALMQLVLDDL...

XP_057809806.1
MEKGKSKYSAGTVTTSLRVLHLDNNSKSTPNSVAFPLQSRCNLEDIIDDFAEIAIAFPSDIKMVLVAIARRRKLLNDDFLVALVDSSWEILDMSGSDVSDSGLSHVVNICHNLKAIDIRLCTRLTPTGVSELLQRCRSLEILRWGGCARSDSVVRRCLSLLEPNLNDVAGDSWEDLDAVELIQGASLRWLVWPTIDKDSQETLTFECPRIVVNPKPSLLGYRGTEVPQEALMQLVLDDLIVKDVDPKTWAVSGCNLSRTA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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